BtaINT0152134 @ bosTau6
Intron Retention
Gene
ENSBTAG00000010497 | TRAF2
Description
TNF receptor-associated factor 2 [Source:HGNC Symbol;Acc:HGNC:12032]
Coordinates
chr11:106301351-106305304:-
Coord C1 exon
chr11:106305206-106305304
Coord A exon
chr11:106301513-106305205
Coord C2 exon
chr11:106301351-106301512
Length
3693 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGG
5' ss Score
7.81
3' ss Seq
CCCACTCCCTCTGTTGCCAGAGC
3' ss Score
8.26
Exon sequences
Seq C1 exon
GCGTTTCCGGACAATGCTGCCCGCAGGGAGGTGGAGAGCCTGCCGGCCGTCTGCCCCAGCGAGGGCTGCTCCTGGAAGGGGACCCTGAAGGACTACGAG
Seq A exon
GTAGGGGCCTCCACGGAGGAGAGCAGCCGCCACTTGGGTGGCCGCACGGAGCTGCGCGCCCGGGGCTGGGGAGCTCACCATGTGTGCATGCTCCTGGGGTGCCCGGGGGGCAGGGAGCAGCAGCATGAGCGGGGCCCGGGTGCGGCCGGAGCACCACGCAGGTGAGAAGTCAGCTTTCTCGCTGCTGGGGTGGTGGTGTCTCCTCGCTGAGCATGTTCACGCTGGAGGATGCAGGAGTGGCCCACTTGTCAGTCCTGGGGTCACAGGAAGGCGTCTTGACAAGGTGCCAGCGACAAGGGCAGTGGCCGGGTGCGTCTCTTGTGGGCCCGTCTGGCAGGTTGGGGAACCTCTGTGCCAGCCACACCCTGGCAGCTGGGCCTACCACGCCGCTGCCTCCTTGGGAGCCGGGCCAGTGCTCTTCCTGGAGGCTCTCCTCTGCGGGGCGCCCGCACAAGCGGTGCCCGCAGCACTTCCCAGTGGTCGGGTGCTCCCCGCGGAGGACGCGGTGCCCACACTGTGGCGGGTCACACCCCGGGCTAGGCCTAGTCTTGAGAACAGGGGGGCCCGCCCCAGGCTGCAGGGGGAGGGGCCTTGGGCTGTTACACCAAGGCCACTCTCAGCCATGGGGTCCTTGACGCGGGGTCTGAGGGAGGGGAGCGCGACAGGGCAGGGTGGCCAGGCCCAGCCTGAGGGGCTGGGGCTCGTGTGTCGGGGCGGCGGGGCCCCAGGCTGGGCCCCGGAGGAGGCCTCGATGCCCGCACAGCCCCCTGGCGAGGCCGCAGGGCTGTCTGCAGGGCACCTGTTCTCTGCCCAGGGCTGCCCAGACCACAGAGCAGTCTCCCAGCCGGGGGGCAAGTCCAGGCTGTCCTGAGTTTCTGCCTGAGGGCGGGGCCCGTCGGCTCTGGAGTGGGACCCTGGGTGCCCGCAGACCCCCTCTTCCTGTCCCAGCCTGGGCCCTGCCCAGCGGTGCTGCCTGTTTTCTTGCCCAACTCGACATCGTGGGCTTCGGGCTCTCGGGGTCTGCATTTTGCCAGAACAGCTTGTCCACGTCTGTGGAGGAGCCTGTGGGCAGATGGACAGCACGTATGCTCTGCTCTGATTAGGCACCGGGCCTGGACGCACAGGCCTTTCTGCGCCCCTTCCGGGAGCGGGACTCCATGGGCCACCATGGGGCAGGGGCACGGACGGGTCCCGTCTGTGGACGGGCCTGCGCTGTTGCTGCCCGGGGCTGTCCAGAGAGGAGGCCTTGGGGCAGGGTCTCCCTGCAGGGGCGGGGGGGGGGGGGTGGGATGCTGTGATGCTTTTTGAGGGGACCAAAGGTCCCTGGGGACAGGTGGAGTAACCCCAGCTCCCGAGTCCTCGGGGGCTTCTGCGTCCGGCTGGCAGTGCGAGGGCAGCTTCGAGGACCTCTGGCTGAGAGCCTGGGACCACAGCCAGCCGTGGGCCCGCCAGCCCTGCAGGCACGCGGGCTGGAAAGTCCCTGGCTGGGCCTGGGAGCTCAGGAAAGTCCCCAAGGGGGTGGTCATGTGGGAGGCGGGCCCGCCTGGTCTCTTGAGTGCAGCCCTCGGTGCAGTTAGCTTAACCTGTCACTGGCTCGAGAGGCCACAGCCGGCAAGGCCCGCCTCGGTGTGCAGGCAGCCACCTTGCTGCGTGGCGGCCCCGCCCTCTGCCCCGCGCCAAGACATCTGCCCTCTGGGTTGCTCAGAACTGGGGCCGTGCTGGGAAATGCTGGGGCTGCAGCTGAGCTCCGGAGAGTGTGGAAAGATGGGGAAAATCCTGTGTAGCCTTTGAATAAGCTTTTCCCTTGCAGTGATGTCTAGCGTTTTCTAAGAACCCAGTGAGATAATGTTCCAGTTCAGTCAGAAGGTGGTAGAGCGCCTGCCAATGCAGGTGGGGGCGGCTGGGGGCTGCTCTCTGGAAGGGAGAGGCAGGGAACGGCAGAGGGAACAGCAGGGAGAGAGGACCTCGGGCTTCAGAGGAGGGTCCGGGCGGACCTGGGGGGGCCAGGCTATGGGGCCGTCGCAGCTGAAAGGGGCGCACAGCGGGGGTGCTGGGCTCTGCCGGGGCGTCCAGAGTTGAAACACCTGAGCATTTGGTTTGAACTCTGGCTGACGGCGTGTTTGTTGATTTCTCCGTGCTGTCCGAGAGGAGTGGGAGCTGACGGAGCCAGCCCGGCCCCTGAACGGGACCCTGAGCCTGGGGGCGGCCGCCGTGGAGTGGGGCCAGGCTCGACCAGGCGGGCCTTCCTCTCCAGGCTTGGTCAAGCTGCCCCGTGCCCAGCCTCCAGCATTTCCTTTGCTTTGATCAAACCCAGGTGCCCCTTGTTTGTGCTTCAGGAGCCGTGGTGTCTCAGGCTCCCCTCGGCCTCCGTGTGGTGGTTTGCCCTGCGCTCAGTGCGGTCAGACCAGAACCCTCTGGGGAGTTGCGGGTGCCCTGGGGGTTCAGGGACGTGCCCCCTGGGCATACCTGCAGGGCAGTGTTTGAGGCGCTGTCCACGGAGCGGCAGCCCTGGGGCAGGGTCCCTCCGCTCTGCTCCCTGCATCCGGTATTGTCCTGCCCACCCGCTGCGCGGCCCGTCTGTGTCCTGGGGCCCGGCCTCCGCAGCAGCGTCCCTGACGCCCGGCCCCCCCCCCGCCCCCCCCCCCCCCCCGCCATGTGGGGCTGCCTGGGGGCTGCATCCCATCTGATGCGCACCCCTGGGGCGGCGTGGAGCTGGGGTCCTGGGGGCTCCCCGGCTGCCTGGAGGGCCTCCCTGTGCCGAGCCTCCAGCGTGCTCCTGGGGTTCTGCTTTCCCCGCAGCCAAGCCTGCCGCGCGAGGTGGAGGCCGTGTGCCCGCCGTCCTGGACTGTGGGCCGCGTGGAGACGGCCCGAGACAGGCTCCTCCTCCTTCAGGGTCACTGTGGCTGACCTCTGGGGCATCCAGCCCTGCAGATCGGCCCTGCAGCCCTGAGCGGCCCCCGCTTGGTTGGGGGCCCAGCCTGCATCTCCACAGAGGCTCTGGCCCCGTGGGGTGGTGTGCTTGGCGCCTAGCTGTGCTCCTACGAGTGGTCATGTTCACATGATATGGATTTGACTGCAGTTTTTATAAAAGCACCGCACACAAAGCGTCACGTCCTGTGTTCTGCTTACTGCCTCTTCCTGCGCCCTTTCCGGCCAGGCTTCCTGACGGCTCTCCTGGTCTCCGCCTGTCCCCTGCGCCCACCACCCCGCCCATTTCCCGGCCCACCCTTTCTCTCCGCTCCAGCTGCCTCCGCCTCCTCTCTCACCCCGTGGCCACCCCAGTGCCCGGCAGGCCTGGCTCTCACGGCCGCGGCACAGCCACCCACGTCGTCGCCTCTCCTGGGACAGCCTGGGCCTGGCTGATCGTTCGGAGCCCCAGGCTGGGACCCCGCGTCCCCGGCCACATCACCCATGGCCTCGGCTCCAGGAGGGTGAGGGGAGGGCCTCCGTCTGGCTGTCGCCTGGGCCGGGGTGGCTCTCCTCTGTCTTTCGTCCTCTGAGAGCCTGTCCCTCTGCCTCCGTGCCCCCCTCACTGTCCCCTCTGTGTCCAGAAGGTGGGGCTCCGCTGGCTGGACCCGGGTCCTGATCTCTGCCCTGGAGCAGGGGCGCCGGAGTGAGCGTGGGGGTCCTGTGGCCTGGACGCGGCCAGAATCCCGCCACTGCCCCGCCGACACCCACTCCCTCTGTTGCCAG
Seq C2 exon
AGCTGCCACGAAGGACAGTGCCCATTCATGCTGACCGAGTGCCCGGCGTGCAAAGGCCTCGTGCGCCTGGGCGAGAAGGAGCACCACCTGGAGCACCAGTGCCCGGAGCGGAGCCTCAGCTGCCGGCACTGCAGGGCGCCCTGCTCCCCTGCCGACATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010497:ENSBTAT00000013869:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0217613=zf-TRAF=PU(96.2=94.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development