GgaINT1028429 @ galGal4
Intron Retention
Gene
ENSGALG00000009014 | TRAF2
Description
TRAF2 protein [Source:UniProtKB/TrEMBL;Acc:E1BTY1]
Coordinates
chr17:539930-546722:-
Coord C1 exon
chr17:546624-546722
Coord A exon
chr17:540092-546623
Coord C2 exon
chr17:539930-540091
Length
6532 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAAT
5' ss Score
8.39
3' ss Seq
TGCTGCTCTCCCTGTCACAGAGC
3' ss Score
9.2
Exon sequences
Seq C1 exon
GCTTTCCCAGACAACGCAGCTCGTCGGGAGGTGGAAAGTCTGCCCGCTGTCTGTATTAATGAGGGCTGCACGTGGAAGGGGACTATTAAAGAATATGAG
Seq A exon
GTAAATCTCAAAGGAGGGCTTTTGGTGTCTGCGCACTTTTTCTTTCCTCTGTGTGCTGACCGGAGAGGTTCGGGGAGGGGGGGGGGGGTGTTTGCTTTCTACTGAAGCTGGCAGTGATGGTGGGAGCTTTCACCTCTGCTTCGCTGTAAGCAAAGCCCTCTGGGAGCTGCAGAGGTTTCCTCACGGAGCTGGCTCTGTGCGTCCTGCTGAGGGCATGGGCTGAGCTGTAAGAATTTCAGGTTCACTTATCATCTCAGGCTCTGAACTCTTCAATTCCACAACAAGAACCACTTGATTTCTCTAATTGCTTTCTGCCCTAAGAGATGAGGAAACTATCAAGGAATTGTGCCTTACAGTGAGATTGTTGTTAAGTTTGCTATGCTGTGTGAACCTGCAGTCTATTTCTGAGCTGTGAGCTTGGGGCACACAGCCTGGCCATCCACAGTCCTGTTTCCAGCCAGCTGCAGGGCCAAGTAGCACCTGCAGAAGGAGGGCAGGGGGTTTGGCTGTCGTTTGCTGACTCAGCACACACCTCTCCAAGTAGCTCTATGCCACCAGGATGTCTTCTGCTCGTCTTTGGAAAGGTTTTCATCTGCCCTTCCTGCTCTTTAATCCAGGCCTTTGGACTTTACTATGTGTACAGCTGTTGTGCTTCATGTGAAGTGTTCTGGGGACTGCAGTGAGCCGCTTCCTTCCCTGTGTCTTCCTATGGGTCAGCTCTGCTGTGCAGAAAGCATTGTTAAAATGTGTTGGCAGCTGGGAGCGACGTTTACCCACCTGTGAAGTTCTGCTGCTCCTGAAGGATCATTTTGTCATCCATAATGGAATGGATGAACCATTACACAAAGGGCCCGAAATAAAAGGAATAAACCTTTTTTCCCCCAACACTATCCTTAGATAAAGGCTGTTGCCTGGTTGTTCATCAGGCTGAGATGTGTTTCAGGAAGGAGTTTCATCTTGGTGTGGATTCTCTTGGCAATGTACTGCAGGATGGCAGGAAGAGACAGTGTGGCTGTGGGTCACTCCTGAGCTCCTGCCCACGACTGTGCTGCTGCTGTGCTTCCCTGCCCTTCTGCCTGGAGCTTTCAGCTTCTTTGTACTGACACTCTGAAAGATAAGTGGGTACAGGATGCTAAAAGCTTCTCCTACTTCAAAACTCTTCTTCTTAGATCTGAGTAGCATGTGGTGTGGATGCACGTGCCTGGCTAAATCTGAAGTTAAAAAGCTTGATGCCAATACAGCATGGACTGCTGAGGAGTCTCGTTGTAGAAATCAGTGTTTTGCTGAGATTCATGATCCAAGCCGTTATGGTGGTGTATGTGCAGGCCTTGTCCCGTGCTGTAATTAGTGCTGATGACCTGTTCCTTATGGCACAGAGGTCTCGTGTCCCTGCTGCAGTGCTCTGAATGCCAATTGTAGTGAGCAAGCTTATCTCCATCAGACTGAACCAAATGAGGTTTGTCAGCAGCTTACCGTGCTCGTGTCAGGATGCTGTGGCTGAGGCACTCTTCTGAGCTCTTTCTCCTGGATTAAAGAAGTCCTGAAGAGCAGCTTCTGCAGGGCTCAGCACAAATTGTCATGTGCCAAAGGTCCTCTCGGTGCGGCTGAGCAGCCGCTCGGGGCAGCAGGCAGCCCTGAGATGGGTCTCCCTTCCCTTGGGTGCACACTGCGGTGCTTTGGGTGCTTGTGCATGGCTTCCAGAGCTGGAGTGATGAGGTGCTGGGAGGCGATGCGTGGGGCTGAGGGCCCACGTGGGGGAAGGAGAGGCGGGCTGAGCGTTAACCCGGTGCTCTGTGCATGTGTTTGGCTGTCAGCAGTGCCCCGTGGGCTCGTAGCTCAGTGTGGCGGTGGTGGCACAGCTCAGCTTTGCAGTTTGCCTTCTGCTGTACGGTTGCATTGCAGGCAGCAATGTGTGTAACAGTGTGTGTAACGTCCTGTGGCAGCAGTGCTCCTGCGATGGAAAGTCCCTTGCTGTGCTATTTCCGACAGGACATGGAAAGTCCCTCCGAGCTAATTCATTGTTTGCTCATTCGAGACTTGTGCAGTGTTGGTACTGAGAGACTGATTTGGCTGCTCTCCACTTATAAATCAAGAGATACCGTCACTTTTGGTTTGCTAACGTTATCGGGCTACGAGCGAGAAAAAAATGTCCTGCAGCTGCAAAGATCTCCAAAAAAACAAGGACAGAGTTAAGCTCAGTTTTGCTTTCTGTTCACGCCTCACAGGGACATACAGAACTGAAAGAGTGAAATCTGCTCAGACATGACTTGCAATTCTGCTTAAAGTTGTGCAAAGCGTACTGAATGTGTAAGCACTCGGAACACGCCTGGGTTTATAAATGCATTTTTCTGACCGTTGGATGCAGTTGTAAATATTTAGCGTTGCTCAGCTGAAGTGTTTTGTGGTGGGGCTGGCAGGGGTTTTCCTTTTAATCTGCACCCCCTTTTCAGATCTAGGTTTCCTGATAATCGGTCTGAATGTACGTACAGGAAGGTGAGCTGTGGGCAGGGGCCTTTAGGTGCAGGCGGAAAATCTGAGCAGGGGCAGAGAAACAAAAACCATCCCCTGAGAGCAAAAGGAAAGACAAAGAAAGCGTGTCCTGTGGTGTCCAGGAGTTTGGGGGAGCAATGCAAATATTTATGCTGGGTCTGCCCAACAAGTTGTGTGCGAAGGGGAGCTCTCATCTGACGTGTGATTGTAATGGCAGTATTTAAACTGATTTGCTGTCAGCTGTGGTGATAACTTGTCCTAATCCAAGTCAGAGAGGGCACTTCTGTTCTGTGTGATCCTTCTGCCCTGGGCTGTGCAGCAACGTGGGGGGTGGTGAAGGACCCCCACTGCCCTCTGTGTAGGAAGAGCTGCTCCTCTCCGGGAACGTGGTGGGGACTCTGAGCGGTGCTTCACTGCTGGATGGCCTCAGCTGTGTCCCTGAGAGCGCCCTGGCAGCTCTTGGTGGTGGCTTTCAGCCTCAGGCTGTGGTTTGGAGCAGAGCTGCTGGTCTTGGAAATACTCACCTGGTTCCTGTTGCCTCTGAAATGTGCTGTTAGGTATTTTATAGCAGCATCACTGGCACAGATGCAGCTTTCTAAGTGTTGTGGCAAGAGCACTTGGTGATGCTGTACCAGAGCAACCAGAGTTCCTTAGAGAATCAGGAATTGGAAGATATTGGCTCCAGGTTGCAACGTGGTGTTCAGTGCTGTTTGCAGGTAACTGATGAGGACCAGATTGCTTCTTCCCAGGAGGACCCACGTGCTGCAGTACCCCACAGTAGCACATAGGGGTGTCCAGAAGGGCCTCCTGTTGCAGCAGAAGGGACGGAATGTGCCTTTGCTCGCAGGAGCTGAAGCCCACAAACAATGCCTGCCCGTGGGGAGCAGCAGTGGCTGGCGGCTCCATCCAGGCTGTGTGGTGGAGGTGAGCGTGGGGAGCGCCGGGCACGTGGGAGGGGGCTGGAAAGCCCCGCCGGCTGCGATGCGCTCACAGCGTGCTGCTGGGAGCCGCTCAGCCTCATTGCGGTGGCCCACCTCGTTCCCAGGCTTAGCTCGAGCCTTTGAAAACCAAGAGCTGCACCTGGCTGACTTTGAAGCTGGGAGGGGGTGATGCTTCCCATTAAAGCCTGTGTGAAAACCCTGGGAAGCCTCTGTGCGCGGCTGTTGGCGTTTTGGGGCAGCACTTCACTGCCAGGTGGGAATTCCTCGGATTCCAGAGATCAGGCGAGTGCCAGAGCCCCAATCACACAGCCTTCTTTAAAAGATATTCTGTCAGCTCTTTGGACAAAGCAAAGCAATTGGGCTTGAGATCAAGCTGCTCACCACAGGTTTGCCTTTTCAACTTTGCAAAATCTGCCCTTCTCCACGTGCTTGTACAGTTCTTGGCCTCCTGCTGTAGCCACCCTTCTGCTGGGTACAGCCTCAGCTGAGGGCACAGCACAGCCTGCCCTCCCCTGCCTCAGCAGCGCCTTTGTCTGTGCTTGGTGTCACTGAGGTTTCAGCCAGGGCTGCTCATTCCGGTGCAATAGATCCAGCTGTGTGTGCTGCTGGAGATGCTGCTTGGAGCAATGGTGTCCGACCTGCTGGTGTGGCTGGGCTGTGCTGAGCGGAGAGAGGTTGTCTTGGGCAGCACATATGTAGATTGCTCTGTAAGTAGTGCCTCCTTTGTGTTCCCTTGGAAACTGCAACAAAGACAGTGAGCCCAATAACGCTGTTTGGTGGAGCGAATTCTCAGCTACAGAATGCTGTTTTTCAACATAGTCACTACCATTAGCTCTCTGCATTTTCATCAGTGATGAGCAAACCCACACCAGCAGGGGTGGCCACTGTCGCTGTCACCACTGCTGAAATGCACCACCCACCCCTCGCTGTGCTCACGTCCACTCTCTGATCTCTATCAGCATTCACAAGTGTCAGTGAATGGCACTCATTGGCATTTTTTCTGCATGGAGGAATTCAATTCCATACATTTGCTCCATATGCACTCCCAGGTCAGGTGCCATTCTGCCAAAGTGCCCTCTGCTGCCATCTGTCACACAGCAACAACACGTAATGGGATATTGGTGGGGAGGTTCAGCCTCTGCTGCCATCCCACCAACATCTGTTTCTGGCACTGTGGCCCAACATCATGAAATAGGAGGCAGCACTTCCAGAGTAGCTTTTGTGAAGTACATAATATAGGTGACATAAGGATCAAAATATTTTAATTTTTAATATATTTGTCATTAAAACATAAAAAGGAAAGCAACAAAGCCGTGCCATGGGCTGGATGTGCCCGCTCAGAGTAAGGGAGAGCTCTGCAGAGCAGCAGAACCATGCAGGCTGCTTGGCATGGTTGGCATACATGTCAGACTGCTTGGTGGTGTGCGGAGCAGAGCAGGCTTTCCTGCTGCTAGCGCCCGGCAGTGTTTGGCTGTCAGGACTACACAGCAGTGCAGTTCAGATGCGTGCTATGAAACATGCCGGTGCCTGGCATCGCTGGCAGGACAGCGTGATAGAGCTGTGTGCCTGGTGACAGCTTGTTCTGAGGCCGTGACCTTGGTTGATGTGGGCAGCCAAGTGGGGCTTTGCCAAGTGGCTGCATGGTAACTGGGAACTGGACCCGTGGTGCTATCTCTGTTTGCAGTTCCTTTGAACCTCCCTACTTATCGAGCAGCAGTTTACCACAACTCATCAGAGCCCAGTATGCTCACGTTGAATTTCCTTGGCAAGCAGATTTGGACGTCTGTGCACATGGAGCAGCTCTCACCCAGCAGGGAGCTCAGGGTGCTCCATCTGAGACCTGAGTCCTCCTGGCAAAACCCATCCTCTGGGCTGGCAGGGATTGCAAAAGAAGAATTTGGGGAAAGCGTCCTTGGATGCCCCACAGGATCGTGTTGCTCGAAGCAGTAGGAAAGGCAGAGTCCATCCCAGGAAGTGGTAGAAATGCTGCTGCTGCTTTCGGTGTTTCTTGTGGTGTCGGCCCTCCCCAGACCCCGCTGCTGCCTCTTGAGCTGCTGCACTGCCGGAAACACTGCCTTGAATTCTTTCTACCTCTGGATACCAAATCAGGCGTCAGTCTCATCAGTCCTAAAAGCTGATGAGTAAAACCATAGAACTTTCTGCAGAAAGCAGAAGTTCTGCAGCAGAGGTCCTCATTCTGCAAACAGAAGTGAGGGAGGCCCTGTGAAAGCTGTAACATCACCTCTGCCAACTTCTGTGCTGCACTCCAGCAAGCACTGTGCAGGCAGCCATGGTTTCCACGTGCCAGCGTGTGCCCAGATGCAGCTCTGAGAAGTGAATAGTGGCTCTTCTGCACACCAGCCATGGACTCAGCAATGCTTGAGACTGAATTAGCCATGCTGCAGTGTCTGGGCTGGCAGTGCCACATCTGTGACTGTGCTTTGTGTGCCCGTCCCCTTTCAGCTGTTTCTCCTCTGCCTTCCTGCAAACCTTCCTTCCTCTTAGCTGCTCCCTCCCTGTTGCCACCCCCTTTGGCTCTGTGCACATCTTTGCTTGTTGTTTCTGTGGTTGGAGAGCTTTCCCGGAGCAACCTGCATCCGTGGGATGCTGTGTGGAGCACTGCGTGGTGCAGCCCAGCCTGCACTGTGTGCAGATAACTGGGGGCTTGCAGCAGAGTACTGCTGGCTGTTCTCAGCTGCCTGCCTTGTCCACAACGTTGTGTCATGCTGATGGATTTCCCAACACAGTTGAGAAACCTCCATAGAATAGATGTGCATTTGTGCCATGTTCAGAGCAGGGCAGCTGGGGGCAAGGACACGTCCTGTTCACCACCACGACGTGGGGATGGTGACTTCCAGTGGTAGTTCAAGTCAAGTTCAGCAGAGCTTTTGAGACCTGGGGCAGCAGTGGGATTAAACTGCAGCTTTCCCTTCTGTCTCATTTACGCAGGCCCGGCAGAGCAGCTCCTCCTGGCGTTCCTTAGCAGATGATCCTTCCAGTTCCACGGATCAGCTGCTGTTGCTAAGCCCTGCTTCTCTGCCTGTGTGTGTGTGTGCTTTTCTGTCCGGCTGTACTGAACTGTGCTGCTCTCCCTGTCACAG
Seq C2 exon
AGCTGCCATGAGGGGAACTGCCCGTTCCTGCTGATTGAGTGCCAGGCATGCAGAGGTGTGATCCCTCTGAATGAGAAGGAGCGCCACTCTGAGCGGGAGTGCCCTGAGAGAACCCTCAACTGCAAATACTGCAAATCACTTTTCTACTTCCCTGATATTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009014:ENSGALT00000014665:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0217613=zf-TRAF=WD(100=88.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]