GgaEX0013227 @ galGal4
Exon Skipping
Gene
ENSGALG00000009014 | TRAF2
Description
TRAF2 protein [Source:UniProtKB/TrEMBL;Acc:E1BTY1]
Coordinates
chr17:537724-546722:-
Coord C1 exon
chr17:546624-546722
Coord A exon
chr17:539930-540091
Coord C2 exon
chr17:537724-537798
Length
162 bp
Sequences
Splice sites
3' ss Seq
TGCTGCTCTCCCTGTCACAGAGC
3' ss Score
9.2
5' ss Seq
AAGGTACGA
5' ss Score
9.78
Exon sequences
Seq C1 exon
GCTTTCCCAGACAACGCAGCTCGTCGGGAGGTGGAAAGTCTGCCCGCTGTCTGTATTAATGAGGGCTGCACGTGGAAGGGGACTATTAAAGAATATGAG
Seq A exon
AGCTGCCATGAGGGGAACTGCCCGTTCCTGCTGATTGAGTGCCAGGCATGCAGAGGTGTGATCCCTCTGAATGAGAAGGAGCGCCACTCTGAGCGGGAGTGCCCTGAGAGAACCCTCAACTGCAAATACTGCAAATCACTTTTCTACTTCCCTGATATTAAG
Seq C2 exon
GCTCACGACGAGGTCTGCCCAAAATTTCCATTGACTTGTGATGGCTGCGGGAAGAAGAAGATCCCCAGAGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009014_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0217613=zf-TRAF=WD(100=88.9)
C2:
PF0217613=zf-TRAF=PU(39.7=92.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTTCCCAGACAACGCAGCTC
R:
TCTCTCTGGGGATCTTCTTCTTCC
Band lengths:
171-333
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]