DreEX0080956 @ danRer10
Exon Skipping
Gene
ENSDARG00000101036 | traf2b
Description
Tnf receptor-associated factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5345]
Coordinates
chr5:53787290-53793249:+
Coord C1 exon
chr5:53787290-53787388
Coord A exon
chr5:53792475-53792636
Coord C2 exon
chr5:53793175-53793249
Length
162 bp
Sequences
Splice sites
3' ss Seq
TAATTCCTTTCCTTGACTAGAAT
3' ss Score
6.07
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
GCATTTCCTGATAATGCAGCACGAAGAGAAATTGATAGCTTGCCTGCTAAATGCCCAAATGAAGGTTGTAGTTGGTCTGGGACACTGAAGGACTTTGAG
Seq A exon
AATCAACATGAAGGTCGCTGTGCCTTTGAACGTGTGAAATGTGAAGCATGTCAAGTGCTTATATTGCTCTCTGAGAAGGACCGTCACAATGAGCGGGAATGTGAAGCCAGAACCCTCAACTGTAAATACTGCAAAGTCACATTCAACTTTAAGGAAATTAAG
Seq C2 exon
GCCCATGATGAAATTTGTCAGAAATTTCCCATGCAATGCAAAGACTGTGGTAAAAAGAAAATACCCAGAGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000101036-'5-4,'5-3,6-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0217613=zf-TRAF=PU(39.7=92.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATTTCCTGATAATGCAGCACG
R:
TCTCTGGGTATTTTCTTTTTACCACA
Band lengths:
170-332
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]