RnoEX0093176 @ rn6
Exon Skipping
Gene
ENSRNOG00000006238 | Traf2
Description
Tnf receptor-associated factor 2 [Source:RGD Symbol;Acc:1310457]
Coordinates
chr3:2754305-2762260:-
Coord C1 exon
chr3:2762162-2762260
Coord A exon
chr3:2756060-2756221
Coord C2 exon
chr3:2754305-2754376
Length
162 bp
Sequences
Splice sites
3' ss Seq
GTACTTCCCTTTGTTGCCAGAGC
3' ss Score
6.22
5' ss Seq
GAGGTGCGC
5' ss Score
7.52
Exon sequences
Seq C1 exon
GCCTTTCCAGATAACGCTGCCCGCAGAGAGGTGGAGAGCCTGCCAGCCGTCTGTCCCAATGATGGATGCACCTGGAAGGGGACCTTGAAAGAATACGAG
Seq A exon
AGCTGCCACGAAGGACTGTGCCCATTCCTGCTGACTGAGTGCCCTGCGTGTAAAGGCCTGGTTCGCCTCAGCGAGAAGAAGCACCACACTGAGCAGGAATGCCCCAAAAGGAGCCTGAGCTGCCAGCACTGCAGGGCACCCTGTAGCCATGCAGACCTGGAG
Seq C2 exon
CTACACTACGAGGTCTGCCCCAAGTTTCCCTTAACCTGTGATGGCTGTGGCAAGAAGATCTCTCAGGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006238_MULTIEX1-3/7=2-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0217613=zf-TRAF=PU(96.2=94.4)
C2:
PF0217613=zf-TRAF=PD(0.1=0.0),PF0217613=zf-TRAF=PU(38.6=91.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTTCCAGATAACGCTGCCC
R:
GAGAGATCTTCTTGCCACAGCC
Band lengths:
162-324
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]