MmuEX6099561 @ mm9
Exon Skipping
Gene
ENSMUSG00000026942 | Traf2
Description
TNF receptor-associated factor 2 [Source:MGI Symbol;Acc:MGI:101835]
Coordinates
chr2:25383752-25392294:-
Coord C1 exon
chr2:25392196-25392294
Coord A exon
chr2:25385807-25385968
Coord C2 exon
chr2:25383752-25383826
Length
162 bp
Sequences
Splice sites
3' ss Seq
TTTACTTCTTTTGTTGCCAGAGC
3' ss Score
7.32
5' ss Seq
GAGGTGCGC
5' ss Score
7.52
Exon sequences
Seq C1 exon
GCCTTTCCAGATAACGCTGCCCGCAGAGAGGTGGAGAGCCTGCCAGCTGTCTGTCCCAATGATGGATGCACTTGGAAGGGGACCTTGAAAGAATACGAG
Seq A exon
AGCTGCCACGAAGGACTTTGCCCATTCCTGCTGACGGAGTGTCCTGCATGTAAAGGCCTGGTCCGCCTCAGCGAGAAGGAGCACCACACTGAGCAGGAATGCCCCAAAAGGAGCCTGAGCTGCCAGCACTGCAGAGCACCCTGTAGCCACGTGGACCTGGAG
Seq C2 exon
GTACACTATGAGGTCTGCCCCAAGTTTCCCTTAACCTGTGATGGCTGTGGCAAGAAGAAGATCCCTCGGGAGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026942-'4-7,'4-6,6-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.016 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0217613=zf-TRAF=PU(96.2=94.4)
C2:
PF0217613=zf-TRAF=PD(0.1=0.0),PF0217613=zf-TRAF=PU(39.7=92.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTTCCAGATAACGCTGCCC
R:
CGTCTCCCGAGGGATCTTCTT
Band lengths:
173-335
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: