BtaEX6047654 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000010497 | TRAF2
Description
TNF receptor-associated factor 2 [Source:HGNC Symbol;Acc:HGNC:12032]
Coordinates
chr11:106301140-106305304:-
Coord C1 exon
chr11:106305206-106305304
Coord A exon
chr11:106301351-106301512
Coord C2 exon
chr11:106301140-106301214
Length
162 bp
Sequences
Splice sites
3' ss Seq
CCCACTCCCTCTGTTGCCAGAGC
3' ss Score
8.26
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GCGTTTCCGGACAATGCTGCCCGCAGGGAGGTGGAGAGCCTGCCGGCCGTCTGCCCCAGCGAGGGCTGCTCCTGGAAGGGGACCCTGAAGGACTACGAG
Seq A exon
AGCTGCCACGAAGGACAGTGCCCATTCATGCTGACCGAGTGCCCGGCGTGCAAAGGCCTCGTGCGCCTGGGCGAGAAGGAGCACCACCTGGAGCACCAGTGCCCGGAGCGGAGCCTCAGCTGCCGGCACTGCAGGGCGCCCTGCTCCCCTGCCGACATGAAG
Seq C2 exon
GCGCACCACCAGATCTGCCCCAAGTTCCCCTTGACGTGCGACGGCTGCGGCAAGAAGAAGATCGCCCGTGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010497-'10-8,'10-6,14-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0217613=zf-TRAF=PU(96.2=94.4)
C2:
PF0217613=zf-TRAF=PD(0.1=0.0),PF0217613=zf-TRAF=PU(39.7=92.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTCCGGACAATGCTGCCC
R:
TCTCACGGGCGATCTTCTTCT
Band lengths:
170-332
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]