GgaEX0013227 @ galGal3
Exon Skipping
Gene
ENSGALG00000009014 | TRAF2
Description
NA
Coordinates
chr17:919012-928010:-
Coord C1 exon
chr17:927912-928010
Coord A exon
chr17:921218-921379
Coord C2 exon
chr17:919012-919086
Length
162 bp
Sequences
Splice sites
3' ss Seq
TGCTGCTCTCCCTGTCACAGAGC
3' ss Score
9.2
5' ss Seq
AAGGTACGA
5' ss Score
9.78
Exon sequences
Seq C1 exon
GCTTTCCCAGACAACGCAGCTCGTCGGGAGGTGGAAAGTCTGCCCGCTGTCTGTATTAATGAGGGCTGCACGTGGAAGGGGACTATTAAAGAATATGAG
Seq A exon
AGCTGCCATGAGGGGAACTGCCCGTTCCTGCTGATTGAGTGCCAGGCATGCAGAGGTGTGATCCCTCTGAATGAGAAGGAGCGCCACTCTGAGCGGGAGTGCCCTGAGAGAACCCTCAACTGCAAATACTGCAAATCACTTTTCTACTTCCCTGATATTAAG
Seq C2 exon
GCTCACGACGAGGTCTGCCCAAAATTTCCATTGACTTGTGATGGCTGCGGGAAGAAGAAGATCCCCAGAGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009014_CASSETTE1
Average complexity
S*
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF131921=Thioredoxin_3=FE(41.6=100)
A:
PF131921=Thioredoxin_3=PD(3.9=5.6),PF0217613=zf-TRAF=WD(100=88.9)
C2:
PF0217613=zf-TRAF=PU(39.7=92.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTTCCCAGACAACGCAGCTC
R:
TCTCTCTGGGGATCTTCTTCTTCC
Band lengths:
171-333
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]