HsaINT0171681 @ hg19
Intron Retention
Gene
ENSG00000127191 | TRAF2
Description
TNF receptor-associated factor 2 [Source:HGNC Symbol;Acc:12032]
Coordinates
chr9:139794874-139802683:+
Coord C1 exon
chr9:139794874-139794972
Coord A exon
chr9:139794973-139802521
Coord C2 exon
chr9:139802522-139802683
Length
7549 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAAG
5' ss Score
8.27
3' ss Seq
CTTCCTCCTTTCGTTGCTAGAGC
3' ss Score
8.62
Exon sequences
Seq C1 exon
GCCTTCCCAGATAATGCTGCCCGCAGGGAGGTGGAGAGCCTGCCGGCCGTCTGTCCCAGTGATGGATGCACCTGGAAGGGGACCCTGAAAGAATACGAG
Seq A exon
GTAAAGATGCCTGCGTGTGGCATGGTGACAGAAGCTCCAGCAGTCGGGAGTCGTCCACGCTCCCCAAGCAGTTATGACCTTGTCCTGCACGTTCCTCTCACTGGGGCTGAAGCCTGTCTGATGTCTGTGGAGGAAGAGACGGAGCTGCTCCTTAGAGTATGTCCATTTAGAAACTCAAGTAGTGCAGAGCACAGACCTGCACCATGGAGCTTGGGCTGTGTGACCTCGGGCGAGGTATTTACCCTCTCTGTGCCTCAGGTTTCTTGTCTGTCGATGGGGGTGCAGGATCCCACCATCGTGGGGTGGCTGTGAGGGTTGGAGGTGCCTGTGTGAGCCCTGGGAATGCCATGGTTATCTGAGCAGTAGCATTTCCTGGGAATGAAGGGGAGATCGCTGTGCACCAGGACCTGCAGCTTTCAAGTTTGGTGGGGGTTTTTGTTGTGTCTCTTGTATCCACAAAGGATTGCTTATTTTGAATTGTGTTGACACTGGAAATTGCAGAAATAATGGACACACTTGTCCTGTGGTCACAGCAACATAGGCAGTGGCCCGCACTTCACTTGGCTGTGGTTTGTCCCTGTGTGCTGGGCGAGCCGTGCACGCCTTCCTGCACTGGGGATTTCAGTGTGATTCTCACGTCACCTTTTAGGCATTTGGAAACTTCACCTGTAGTGTAGAGGCCAGGAGGTGCCGAGAGAGCTCGTCGAGGCCACTACAGCTCGCCAAGTTATGCAGTCTTCCTTCTTGTAATGAATGCCCTTTAAGAGGTTTCTCTCTGGGATCCTTGTACAGGATTCCTGGAGTAACACTGTCCACAGAGCCCAAAGGTAGAGGCAGCCCAGTGTCTGCGGATGAATGGATAAACACGGGAAGTGTGATCTGTGCACACAGTGGGATATGATTCAGCCTTAAAAAGGAAGGCGATTCGGACACACACACCCCAGGGATGAACTCTGAGGACAGTGTGCTGAGTGACATGAGCCAGTTACCAAAGGACAGATCCTCTGTGATTCCACTTAGGGGCCACCCTTAGAGTCATCAGATCCATGGGTACAGGAAGTAGAATGGAGGAGACAGGGGTCATTGTTCAGTGAGTACCGAGTCATACATTGGAATGAGGCAGTACCTTGATGCCATCCAATCCAGCCCCAGGTTGGTGAGGCTGTGAGGGCTGTTTGCTCAGAATCCTGGCTTTCTGCACTTAGGGGAGCTTCCTGCCCGGGCCAGAGCTGGGATCTCCTGCTCAGCCGGACCCTGGGGTGTTACCGGCTGGGTTGGAATTGGACCTGCATTACTGTGTGTTTCTCCTCTCCTGCTCCCCGCCCTGTGAGCCTGGCCACGCCTCCCTCTTCTCCTCGCCCACTCCCCACCCTGTGAGCCTGGCCACACCTCCCACGATCTTTTGACAGACTCTGCTTTGTGGTCTTTGGGCTCCAAGTTTCGTTTTTTCAGAAGAACTGCCCCAGCTGTGTCTGGGGTGAACAAGATGTGCTTTCCTCCCTAGCACGGGGATTGCGTCCTGGACACGGAGCGGTAGCTCCAGGGCACTGCCCTAGAGTGAGACTCCTACCTCTGTGGGCAGAGATGCCAGACCGCCCTCAGCCACGACGTGCGATGCAAAGCTTTCTAGGCTCCTGTGTGGCTCTGCCGCACAAACGGCTGTGGCGCATGGCATTGTACCCCCCACTCCCTGCTCCTTGAAAGAGATGCAGCTTGGTCATTGCCCAGTGCTGTCTGCAAGGGAGATGGCTCCCTGGGGAGGTGGCCCAGGGTCAGGGTCTCCCTGGGAGGGTTGGGGTACCAGCTGGCTGCAGGGAGTAGGGGTGCTATGCGCCATGCCACCCTTTGAGAGGACTGAGGAGTGTCTGGGGGACAGGTGGGATAATAGTTTCCAGCTCTGCACTGGACCCTGAGTCCTCTGGGGTCTCTGCCACCTCCAGGCTCATGGGATGCCACATTGACAATTATGAGGGCCTCCGGCTGAGGGCCAAGGACTATAGCCAGCCCCTGGCCTGGGGCGCCACGCGGTCCTGCAGGCACGCAGGGTGGAAAGTCCCTGGCTGCACCTTTGAGAGCTCTGGAAAGTCCCTGAGAGGAGCCGGGTTTGGTCATGTGGGAGGGGCGGGCACTGCTCTGGAATAACTTGGCTGTGGCCTTTGATTTTGTTGATAAAACCTCTCACTGGCTGTAAATGTCACACATGGGGACGGAAATCAACCCGTCTATACAGTTGGGAGCCGCTCTGCCCCTCGGAGCCGCCTCTCTTTGCTCTCCGGGTGCTCGGAGTGTGCTGCTAGTTGGGGCCTTATTGTAAACACAGTACGGAGGCTAAGGCTGCCTTTCCTCCTTGATGGTCGGAACTTTATTGGAAAAGGGGAAAATCCTGCTTAGCTTTTGAATGTTTGTCCTTTGCAATGATGCCTTTCTAGGAACTGAATGATTTTATTTATTTATTTTTATTTTTTTGAGACGGTCTTGCTCTGTTGTCCAGGCTAGAGTGCAGTGGCGTGACCTCGGCTCACTGCAGCCTCCACCTCCCAGGTTCAAGTGATTCTTCTGCCTCAGCCTACAGGCGCCTGCCACCACATCCGGCTAATTTTTTATATTTCTAGTAGAGATGGGGTTTTACCACGTTGGCCAGGCTGGTCTTGAACTCCTTACCTCAAGTGATCCATCCACCTTGGCCTCCCAAAGTGCTGAGATTCCTGGCATAAGCCACTGCACCTGGCCAAATCGAATAATTTTAAAACTTTAGGTAAATGTTGATGGAGTGCTTGCTGAGTGCCAATAGCAGAACTGAATTCCCCAGTGGGCCCCTGAGCTACTCGTTCTGGCAGCTGGATGCGGGGGTGCGGGGAGACTTTCCAGAGAGGACATAGGCTGGCTGCACGAGCAGCGGAAAGGCCAGGAAAAGCCAAGTATGCTCGGCCTCATGGACATTCTAGTGACATTCAGAGGGATGACGACTGTATTTGCGTCAAATGTGTAGTTTGAATTCTGGCTGAATAAATATTGATTTTTTTTTTTTTAAACTGTGTCTGCTGTGGGTGGGGAGAAGACTGAGACAGATGGTGCTGGTGTAGATGTATCTGCTGCAGGACAACCCTGGTCCCACTGGAGATTTCAAGTACCGAGTGCCAAGAGAAAGGTTTTTTTTGTTTGTTTGTTTGTTGTTTTTTGCGATGGAGTCTCACTCTGTCACCCAGACTGGAGTGCAGTGGTGCGATCTCGGCTCACTGCAAGCTCCGCCTCCCGGGTTCACACCATTCTTCCTGCCTCAGCCTCCTGAGTAGCTGGGACTACAGGCGCCCCCACCACTCCCGGCTAATTTTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATGTTAGCCAGGATGGTCTCGATCTCCTGACCTCGTGATCCGCCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCGCCCAGCCAAGAAAGATTTTATTTTTGACATTTCGAGCATGCAGCGCATCTGAGCAGTGAGGCTGAGAGTAGAGGTGTGCCGCTGCCCCACAGGCCTACATGCTGCCCCGCAGCACCTGCCAGCCTTCGCCAGCCTACTTTCAGCCCTTCAACCCCCCACACACATTTTTTTCTTTTCTGGCTTATTTTAAAGCAAATGAAGATGTCATATCATTTCACCTATGAGCATTTTATTACTATTATTTTTAGAAATAGAGTCTCGCTCTGTTGCCTAGGCTAGCGTGTAGTGGTGGGATCATAGCTCACTGCAGCCTCAAACTCCTGGGCTCAAGTGATCCTCCCACCTTGGTCTCCTAAAGTGCTGGGATTACAGGTGGGAACCCACTGTGCCCGGCCATTTTACTATGTTTTAAAGAACAGTCTTTTTTATTTTTATTTTTTTATTTATTTGAGATGGAGTCTCACTCTGTCGCCCAGGCTGGAGTGCAGTGGCACGATCCCGGCTCACTGCAAGCTCCACCTCCCACGTTCACGCCATTCTTCTGCCTCAGCCTCCCGAGTAGCTAGGACTACAGGCGCTCACCACCACTCTCGGCTAATTTTTTTTGTATTTTTAGTAGAGACGGGGTTTCACTGTGTTAGCCAGGATGGTCTCAATCTCCTGAGCTCGTGATCCACCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAAGGCGTTAGCCACCGCGCCTGGCCTAAAGAACAGTCTTTTAATTAAATCTAAGAACATTGACTATTTGTGCTTTCGTTTTTAGGTTTCATAAGCCAGAATAGTTGCTGAGGCTCCTCTTTGATTCAGCTTGATGGTGGCTTGTTACACACTAGTGTGGCCGAGGGCTGGGTCCTGTCCCGTCAGTGGGTAGCAGAGTGCAAGGCGCTGTTGGGTTCAGGGAGTTGGTTCCTTTAGCAGGCTTAGCTTGGGCCAGTGCCGCTGGAGGTCTTGGAGGGCTGGGCCCATGTTCCCTGGGGCGCCTCTAAGGAGTAGTTGCTGTGCCTGTGTGAAGGTTTGGGAGGAACACTCCCTGGGGAGGTTGAATGGAAGCCAGCCCAAGTGCCTGTGCTGTCCAGAGCAGGGTCTCCCCTCTTGGGGGAAGTAGCATTAACCTTTCCTGAGTCACTTGGGGCTCCTGAGCTGTAGCCAGCTCTCTATGGAGCTGCTGACCCCCACTCCCCACCCCATGAAGGGCCCCGCAGCCAGGTCCTCTGCTGCCCTGGCCTCTCAGGAACCTTCCTCTCAGCACATTGTCCTCCTCTCTCCGGGTTGTGCCCATCGGTACAGAATATGCTCTAGTCTCTCCTGTCTCAAAACTTAGTGTTGTGCTCAGTGAGCTAAGCTAGGCACAAGAAGATAAAGACTGCGTGAATTCACTGACAGAGTCCCCGGAGTGGTCAAATTGAGAGCCAATAGATGGTGCTGGGGGCTGGAGCAGGGGAATGGGGAGTTAGGGTTTAACAGGGACAGGGTTTCAGGTTTCTACAATGGGAAAGCGTGATGGAGGTAGATGGTGGTGATGGTTACATAACATCAGTGAAATGTACTTAATACCACAGAACTGTGCACTTGAAAATGGTTAAGATGATACATTTTATGTTTATCATGATTGAAGAAACAGCAGATTTTCAACTTCCTGTTCCTTTGACTTCCATTCCCTTTCTCTGTTCCCAGTCATAGCAGACTTCTCCCAAAAGACGTGTTTAACTCTGGCCAGGCACAGGGGCTCATGCCTGTAATCCCAGTACTTTGGGAGGCTTAGGTGGGCAGATTGCTTGAGCTCAGGAGTTCAAGACCAGCCTGGGTAAGATGGCTCTACCGCCGGGCGCGGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCAAGGCAGGTGAATCACGAGGTCAGGAGATTGAGACCATCCTGGCTAACACGGTGAAACCCTGTCTGTACTAAAAATACAAAAAAATTAGCCGGGTGTGGTGGCGGGCGCCCGTAGTCCCAGCTACTCAGGAGGCTGAGGCAGAAGAATGGCGTGAACCCAGGAGGTGGAGGTTGCTGGTTGCAGTGAGCCGAGATCGCGCCACTGCACGACAGAGCAAGATTCCATCTCAAAACAAAAACAAAAAACCAAGATGGCTCTGCCAAAAATACAAAGAAATTTAGCTGGGTGTGGTGGTGCGTGCCTGTATTCCTATAGTCCCAGCTATGTGGGTGCTGATGTCGAGGCTGCAGTGACCTGTATTCTTACCCCTGCACTCCAGCCTAGGTAACTGTATCAGTCCATTTTCATACTACTATAAAGAAATACCCGAGACTTGGGTAGTTTATAAAGAAAAAGAGGTTGAATGGACTCATAGTTCCATGTGCCTGGGGAGGCCTCACAATCATGGAGGAAGGCAAAGGAGGAGAAAGGCACGTCTCACATGGCAGCAGGCAAGAGAGCATGTGCAGGGGAACTGCCCTTTATCAAACCATCAGATCCCATGAGACTTACTATCACGAGAGCAGCACGGGAAAAACCCACCCCATGATTCAATGACCTCCCACCAGGCCCCTCCCACAACACATGGGGATTATGGGAGTTGCAATTCAAGATGAGATTTGGGTGGGGACACAGCCAAACCATATCAGTGACAAAGTGAGACCCTGTCTCAAAAAACAAAACAAAACAAAAAGCCCTGTTTAGTTTTATTTCTGTACCTCACCAGCCCCTTATGGAGGCAGGTGGGACCTCCTGTGGCTTGGGCCAGAGGCCTGAGAGTCCTTCTTGACTTCTCTGTGTTCCTGTAAGCGGCACGTTCAGTCTGCCGGCAGGTCCACGTGGCTCCCCAGACACATCCTGAATCCGGCCCTCTCTCCCGTTACACTAGCACCTTTGTAGTGCCTGCCACCCCGTTCTTCCTCCTGTGACTGCTGCGGCTTCCCAACCTTAGAGTCTGTGAGAGGTGCAGCTGCCAGGCAGTCCTGGAAGGGTTCAGCCACATCCCGTCACCTTGCTGTCCTGACCCCTCACATTCGGGCAGAGCCCTCAAGACGGTCGGGGAAGCCCTGCCTGGGGCAGCAGTGGGCTGGAGAGGTGGCTGGGTTCTGCATCCTACATTCTTGATTCTTCCTGGCCTGGGTGTGGCGAGGAGCTGGCACCGCCTCCCTTCCCTCTGTGTCCTTTTCCCTTGCCACCCTGGCCATCTGTGGACGTCCACAGTCCTCTGCCTCGCCTGACGCTTAGCCTGCGGCACCGGCTCCCGCTTCCCTAGTCTGCAGTCTGCATCTTGTGGCACCTTCCCCGGCCCTGCCTCCACTGCCTGCCTTCCCTGGTGTTCTGGCACTGGTGGTCACTACCAGGTTGTCAGCTCCAGGAGGGCAGGGCCTCTGCCCAGCTCCTGGGTGGCTCAGTGTGTGGGAACGTGTAGGTGCCTGAGTGACCTTCCTGTGTGTCACTGGCCCTCGCCTGTCTTCCTCGCAGCTTCGGCCCTTTCAGATGCGTGTGCTGTGCAGCTAGACCCAGCTCCTGGCACCTTGGCCTGGTGGGCTTGTGCCTCAGGCCTTTGCTGGCTTCCTGGTGCTGGAGGCAGAGGCCAGCTGCCCGCATGCTATCTCCCGTGCGTGTTCCCTACCTCTTCACACCTCCCACCTGCAATGAGGATGGGGCTGGGACTGGCAAGACTCAGCCTGGACCGCGTTGGGCTTGGTCATCAGATCGAGCGTGGCCTGCTTTCTCGGTTAGGAGCTGGTGTGTGTGGCAGGGACCCGCTGGCGCAGAGCAGGGACTGTGCACTTGGCTGTTTCAGGGGGCAGATCGGGGAGCCTGGTGGTGGCAAGGCATCCACACAGAGACCCCCATGGCAGAGCATCCCCTCAGCTCAGTGTGCGGTGAAGAGAGTGGAGACGAGGACACACTGATCTGATCTCCTCCTGCCCTCCCACCTGTGGGAGCCCTGAGAGCTATCTGCAGAGGGCGGCCCCCAGGACCAGCATGCGGACACCAAGCCAGCGCTACATCGCCTTGTGTCCCCGGGTGAAGCTGTGGCTGCCCAAATGTCCCACGCGAGTTCTACTGACGCTTCCTCCTTTCGTTGCTAG
Seq C2 exon
AGCTGCCACGAAGGCCGCTGCCCGCTCATGCTGACCGAATGTCCCGCGTGCAAAGGCCTGGTCCGCCTTGGTGAAAAGGAGCGCCACCTGGAGCACGAGTGCCCGGAGAGAAGCCTGAGCTGCCGGCATTGCCGGGCACCCTGCTGCGGAGCAGACGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000127191-TRAF2:NM_021138:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0217613=zf-TRAF=PU(96.2=94.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)