MmuINT0164480 @ mm10
Intron Retention
Gene
ENSMUSG00000026942 | Traf2
Description
TNF receptor-associated factor 2 [Source:MGI Symbol;Acc:MGI:101835]
Coordinates
chr2:25530287-25536774:-
Coord C1 exon
chr2:25536676-25536774
Coord A exon
chr2:25530449-25536675
Coord C2 exon
chr2:25530287-25530448
Length
6227 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGAT
5' ss Score
6.04
3' ss Seq
TTTACTTCTTTTGTTGCCAGAGC
3' ss Score
7.32
Exon sequences
Seq C1 exon
GCCTTTCCAGATAACGCTGCCCGCAGAGAGGTGGAGAGCCTGCCAGCTGTCTGTCCCAATGATGGATGCACTTGGAAGGGGACCTTGAAAGAATACGAG
Seq A exon
GTAGATGGACATTTCTGTTCTGGCCCGGTGGCTGAGTCTCCAGCAGTGGACTTTAAAAAATAATTTATTTCTATGCATGTGTGGTTTGCTTGCATGTATGTCTGTGCAAGTGTATTGGACCCTTGGAACTGAAATAATGGACAGCTGTGAGCTGCCTACCGAGAATTGAGCTGGGTCCTCTGAAGAGCAGTCAGTGCTCCTAACTTTTTTTTCTTTCTTTTTTTTTTTTAAGATTTATTTATTTATTTTATATAAGCACACTGTCGCTGTCTTCAGACACTCCAGAAGAGAGCATCCAGTCCCATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGAATTGAACTCAGGCCCTCTGGAAGAGCAGATGGTACTCTTAACCGCTGAGCCATCTCTCCAGCTCCCATGCTTTTGAGTCATCTCTTCAACCCCTACAAAACATTTCTCATAGAAGCCGTGTTCTAGTTTTGCTAGAACTGGCCTGGCTAATGTATGTGAAAAAAGTTCCTCCTCAGAGCTGGCCATGGTGGCACACTCCTTTAATGCCAGTACTCGGGAGGCAGAGGCAGGTAGATCTCTGAATTTGAGGCTAGCCTGGTCTACAGAGAACGTTCCATGACAGCCATCACTTCATAGAGAAACCCTGTCTCAAAAAAACAGAAAAGAAAGGAAAAGAAGGACCTTTTTTTCTCTGAGTATGCCTGTGACCCCAGCACTTGGGAAGGTGAGGCTAGAGAATGCTGAGTTGAGGGCTAGCTGGGCCTACCTAGCGAATTTTGTTTTTGTTTTATTTTGTTTCTTTCTTTGTTTAAAGAGTACCCTTTTTGAAACCCAAATAGTGCAGGTAGGCCTGTACCATAAGCCTGTCACTTCTTTCCACGTCCTACTCCAGTTCCCCAGAGGTACAGTAGGACGGGAGTGCCTTACATAAGAAGCTAGCGCCAGGCTGGCCTTGGTAACACCTTTGTGTTGCTTTGGCTGCAAAGTTTTCATTGTTTGCAGGAAGCTGCAGCTTTTAAGCTCAGTGGGAGTCTGTGGTGTATATCATACCCACCAGGGATTTCTCTATTGTTATTTGTTTTCTATTTCTTTTGAGTCAGTCTTTTTTTTTTTTGTTTTTGTTTTTTGTTTTGTTTTTCGAGACAGGGTTTCTCTGTATAGCTCTGGCTGTCCTGGAGCTCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGCGTGCATCACCACACTCGGTGTGAGTCAGTCTTTCTATAGCCCTGTTGTCCTGGAATTCAGAGATCCACTTGCCTCTGCCTCTTGAGTTCTGGGATTAAAGATGTGCACTACCCTGCCTCACTCACAAGAGTTTTCTTGCTGTGAATTGTGTTGACTCTGGAAGTTATTTAACTAATGGGTATATTTGTTTTGGTCACAGAAAGTCATCTAGAAGGCCAGAGGAAGAGGTGGTCTATGAAAGGGGCCAGTGTAGTGTGGACATTAGCATGAGCTTTTTTTTTTTTTTTTTTTTTTTTTTTAGTATGTCACCTTTAGGCATCTTGAGTTAAACCTGCATTACAGAGGCCACGTGGTTAAGTGACACTCCTCCAGTCTACCAAGTTTCTCATTCCTCTTGTTGCTTTAGTCAACAACCTTCAAAGAAGTTTTTGATTCCGCTGGACATGGTGATGCACACCTATAATCCCTATTCTTAGAAGGCTGAGACAGGAGGACCATGTGTTCAGAGGTGGCCCAGGCTGCTAGTGAGGCCTTGTCTTTCCTATGCCTGCCTCTTGTGTCTGGCTATATGTCCCGTGACCTGTTGACTGGTCACACTTTAGGTTTCAGTCTCTAGCTGAGCAGTTTGGGCTTCACTTGGGTGAACAAGAAACTCATTTTTTTCAAGCATGGTGTCAGGACCTGATCAAGAGTCATAGTCCACACTGTATCCTTAAAATGAAATGCTTAGTGCTGCCTGTGAAAGAGACGGCTCCTAGGGAAGTGACATGCTTGGTGTATTGGGTGGATGCAGGAAAATGTGGGTGTAGGGCATGGTGGCCTATAGAACCTGTTTGCTCTTGAAGGTGTTTTGAGAGACCCCTGGGGCAAGTGGAATAATTCTTCCCAGGCCTGTGGTAGGCTTTAGATTCCCCCAAGATTTCTGTTGCTTCCAGGCCTGTGGTACTGTAGGTCAGTGACTGTGTGGGCCTCTGACTGATGGCCAGGAACTGCAGCCAGGCCATGGGCTTGGTGCCATGTGGCTTTGTAGGCATGCAGAGTGGAAAGTCCCTGGCTGCACCCTTTGAGAGCTCTGGAAAGTCCCTGAGATGAGTTGGGTTTGGTCACATGGGAGGGCAGGCACAGCTCAGCCTTAGCTGATTTTATTGATAAAAACTTGTCGCTGGTGGCAAATGTCACAAGCCAGAGAAGAAATTACACCCTCTTTGTGCAGTCATCACCACAGATAATCCTCTCTTCTGCCTGTCACAAATCTCTTTATTTCTTAGCTTTCACTGGAACTAAGGTTGTAACTAAAACATTTTTTTTATGGTTTGAATTATTTAAAATGTTTGAAAGATGGGAAAAAAATCCTGCTTAGCCTTTGGCTCTGTTTTCCTTTATGATAATGTCTTTCATTCTGAAGATGAATTGAAAGCTGTATTAAAGTCTGTTGTCCTGAAGGCAAAGCCTGGTACTGCACTAGGGAAAGCAAAGGCTGCCAGATCTCTGTGAGTTCCAGGCCAGCCTGGTCCCCACATAGTGAGTTCCAGGCCAGCCAGGCTACAGATTCCAGGGAACAGCTGAAACTGGGAAGGCAGGTGTGCCAGTCGGCATGGCCTCATCGTGGACTTGCTTTTCACATTTATTTATTTTATGTGTATGGGCTTTTATCTGTATATGTATATGTGCATCACTTGCATACCTGGTGCCCAAAGAGGGACTAGAAGAGGGCACTGGCTCCCTTAGAACTGGACTTAAGGTTGGCTGTGAGCCACCATGTGGGAGCTGGGAGTTGAACCTGAGTCTGCTGCAAGAGCAACAAGTGCTTCTAACCACTGAGCTCTCTCTCCAGCCCATCATTATAGTCTACATAGTGAATTCCAGACCAGGCAAAGTTATATAGTGAGACCCTTTCTCAACCACACCCATCCACCCCACCCCCCAAAATTTCAGTTTTAACAACTATATTTTCTTAAAATGTTAAATTTGAATTCTGCTTGAATAAATGCTGATAGATTTAGATTGTGTCTGCTAGGGGAGTTTGAGCTTTGTCTTTGTTGCCTGAATGTGTTGTTACAAGTGTGTCTTCTGTAATCCTTTATGGTCAGGACCTGAGGACAAGCATTCATTCCCTGGTCTCCCCCAGGACTCATCTAAAAAAGTCAGGTACGGCAGCATACGCCTGTAATCTCAAAGTTGGAGAAGCAGAGACAGGAACATCTCTGGGGTTTGGTGGCCTGCCAGCCTGGAGTATTGAGTGAATATTCAAGTCACTCTCAGGTTCTGAGTTTAGCTGGGATTTGAAGCAGCCAGTGCAGGGCATGGAACACAGGGCCATGAACACACAAAGCACATACTCACCCACTGAGCCTCACCTGTCCCAGGAGAGAAACAGTTTATTGAAATTTGTCAGAATCCAGGTTTCATAGAATGAATTGCATAAGGTCCTGTCTCAAAAAACCAGTATGAGAAATATAGAGAAACTCTGAGCAGAGGACTGAGAGCCAAGTCAGTGCTAGGCTCCTGGTGCCTCCAGAACTTCTGTCAGCTGTCTCTCAGCCCGTGTTGGCCTTTGTGGACTACTTCAAAGCAAATGTAAGATGCCTCGTCATTTTTCTTGTTTATTTTTTAGTATAGAGGATTAACTCCAGGGTTTTGTGCATTCTAGGCTTTCTTCTACCGTATAACAGCTTTGTATAGTGTGTGTGTGTGTGTGTGTGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTCTCCATGTGGCTGCGCATGTGTGCATGTGCATTTGGAGACCAGAGGTTAACATTGGGTGTCATTTCTCAGGAGCCATCCACTTTACTAAGATAGTTTCCTATTGGCCTAAGCTCAGCACTTAGTCTAGGATTCCTGACCATCTTACCTGAGGGTCCTCCTACCTTTGTTTACCCAACATTGGAATTACAAGAGCACACTGCTATATGTGACTTTTTAAAATAGGAGGTTTGAGGGTCAAAACTCAGGTCTTAATGTTTGTGTGGGATGTACTTTCATCAGCTGAGCCATTTCCCCAGCCCCAAGTCATAAGTAGCCTTTTAGTTAAATTATAGTAACAACTAATTTTTTTCAAATACTATTTGTTTATTTAATGTATATGAGTACATTGTAGCTGTCTTCAGACACACCAGAAGAGGGCATCAGATCCCATTAAAGATGGTTGTGAGCCACCATGTGGTTGCTGGGAATTGAACTCAGGACCTCTGGAGAAGCAGTCAGTGTTCCTAACCACTCAGCCATCTCTCCAGCCCCAACTTAACTGTTTTTGTACATTAGTCTTACCTTCTGTAAACTGTTATAGCATAATAGCTTGAGGCCTTTTTTTTTTTTTTCCTCCGAGACAGGGTTTCTTTGTATAGCCCAGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCAAACTCAGAAATCCGCCTGCCTCTGCCTCCTGAGTGCTGGGATTAAAGGCGTGCGCCACCATGCCTGGCTGAGGCCCCTCTTTGTGCTTGTTTAATAACTAGTTGTTGCACACTCAGGGAGTTACAGGATCATGGCACACAGAGCCCCTTGGGCTGGAGCGTTAGTGTGGTTGTCTAAGCCCTTATGTGTCCTAGCTTGGGGGTTGCCAAGCACTTAGACTGAATGCACCACTTCTGCTTTTCCCGACTACAGTCCCACCTCCGTCCTAGGATTTGATTGAGGGTCTCTCACCCTGTTGTCTTCTTAGAGCAACCTTCCTCCAGAGTCATTTGGATAACTCTGAACAGCTGATTTGATCTTTATGGCTCTGCTGTTGGGTCTTTTCTCGCCTACTCTGGACTGTGTCTCAGCCTCAGGAACTTGCCTCTTGCCTATTAACCTTCTCCTAGAAGTTTTCCTCCTCTGTAGTTCGCTCTGTGTCTCTGCTTCCAAACACACACACACACACACACAAAAGACCGTAGCAAGAGAGAGACAATGGTGAAGGTTTCCAGGGGTGGAGGAGTCTGTGCATGGAGATAGAGTTAGCACTTAGGAAGAAGGGAGTTCTGTGGATGAGCAATGGAGGCTACACCGTGCTTCCTGTACTGACCTGTGTGCTTAATGTAGGCCATCAGGCATAGATGGTACACATCTTTAGTCCTAGCACTCAGGAGGCAAAGGCAGGCAGATCTCAGAGTTCAGAACCAACCTGGTCTATAGAGGGAGTTCTAGAACAGCCAGGACTATATAGAGAAACCCTGTCACACACACCCCCAATAGTATAGGGAGGAAAACAAAAAGATAGCTTAGCCAACAAATTGCTAATGCCATGTTCCTCTGGTCACCTGTGTCTTAGTGGTCTATTGCTGTGCAGAGACACTATGACCCAGGCAACTCTTATAAAGGACAACATTTAATTGGGGGATTGCTCTTAGTTGGGAGCTGTCTGGCTTACAGTTCAGAAATTTAGTCCCTAATTGTCATGGTGGGGAACATGGCAGCATGCAGGCAGACATCTGTCTCTTGATCCACAGGTAGCAGAAGGGGGCTCTGTTACACTGAGCATAGTTTGAGCATAGGAGACTTCAAAGCCTGCCCCCAAAGTGACATCCTTCCTCCAACAAGGCCACATCTCCTAATAGTGCCACTCCTTACTGGCCAAGCATTCAAACACATAGGTTTATGGGGACCATACCTATTCAAATCACCACAGAAGCTGATATGGGGGTGGGGTGGGGTGTCCGGGTGTGTATGGTTGAAGAGTTGGGTGTCCTGGGGGTATCATTCACTAGAGAGCAGCTGTAATGAAGCAGCTCAGTCTAGCACAGCTAGGAGTCAGCATCCTTGGTTTCTGAAAGTGAGAGAGGATACAGTGGCCTGTGTCTATACAGTGGTTCTGAGGGGTCAGTCTCCATGATGGGCAGGCTGGACAGCATGGACAGCAAGCCACTTGCATGTGCTGTGGCCACCTGCGTGTCTGCGTGCTATCTTCATTTACTTCTTTTGTTGCCAG
Seq C2 exon
AGCTGCCACGAAGGACTTTGCCCATTCCTGCTGACGGAGTGTCCTGCATGTAAAGGCCTGGTCCGCCTCAGCGAGAAGGAGCACCACACTGAGCAGGAATGCCCCAAAAGGAGCCTGAGCTGCCAGCACTGCAGAGCACCCTGTAGCCACGTGGACCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026942:ENSMUST00000028311:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.016
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0217613=zf-TRAF=PU(96.2=94.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types