BtaINT0153716 @ bosTau6
Intron Retention
Gene
ENSBTAG00000005190 | TSC1
Description
TSC1 protein; Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:A6QQZ6]
Coordinates
chr11:102982289-102982834:-
Coord C1 exon
chr11:102982723-102982834
Coord A exon
chr11:102982405-102982722
Coord C2 exon
chr11:102982289-102982404
Length
318 bp
Sequences
Splice sites
5' ss Seq
CTGGTATGT
5' ss Score
8.14
3' ss Seq
GTTCTGCTCTTGTCTTGGAGCAG
3' ss Score
0.33
Exon sequences
Seq C1 exon
GCTACTCTTTGGAGCCCATCTGCAGTTTGTGGGATGACCACTCCTCCAACTTCTCCTGGAAATGTCCCACCTGATCTGTCACATCCTTACAGTAAAGTCTTTGGTACAACTG
Seq A exon
GTATGTATGGCCTAGGTTAGGTTTGGCTGGTTCAGGCCTGCCTGTTATGATAAGGAACAGTCTCCTCTAAGGTCTAAGGGTTTGAGAGCCTCTTGGTGTAGGGAACCTAGTTTTGATGCCTAATACAAATGCCTGGAGCTTTCAGAAGTTCAAGTGAGCCTTAAAAAAAAAGACAGGCTGATATAGACTCTCCAGAAAGTGAAGTGTAGCAGCTTTCTTTGCAGTACTAGTTAGGCTGGGAAAGAAGAAAAAGTGGCGGTTTTCCTAATCGTTAAACTAACAGTGTGTTTGTGTGTGTGTTCTGCTCTTGTCTTGGAG
Seq C2 exon
CAGGTGGGAAAGGAACTCCTCTGGGAACCCCTGCAACCTCTCCTCCTCCAGCCCCACCCTGCCATTCGGACGACTGCGTGCACCTTTCACTCCCACAGGCCACGGCCCCCAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005190:ENSBTAT00000006842:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.921 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF043887=Hamartin=FE(5.2=100)
A:
NA
C2:
PF043887=Hamartin=FE(5.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACTCTTTGGAGCCCATCTGC
R:
GTGGCCTGTGGGAGTGAAAG
Band lengths:
214-532
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development