RnoINT0156985 @ rn6
Intron Retention
Gene
ENSRNOG00000011470 | Tsc1
Description
TSC complex subunit 1 [Source:RGD Symbol;Acc:620124]
Coordinates
chr3:7251195-7251674:+
Coord C1 exon
chr3:7251195-7251309
Coord A exon
chr3:7251310-7251555
Coord C2 exon
chr3:7251556-7251674
Length
246 bp
Sequences
Splice sites
5' ss Seq
CTGGTATGT
5' ss Score
8.14
3' ss Seq
TTGTCCTTGTGTCTGAGCAGGTG
3' ss Score
8.39
Exon sequences
Seq C1 exon
GCTAGTCTTTGGAGCCCATCTGCAGTCTGTGGTATGACCACTCCTCCTACGTCTCCTGGAAATGTCCCGGCTGATTTGTCACATCCATACAGTAAAGCCTTTGGTACTACCACTG
Seq A exon
GTATGTGGGTCTTAGGTGGGACTTGATTGCTTGGTTTGGGCCTGTGTTTTATGGGGGCCATATGGCAGTAATAAACTTGTTTTTGAAATTTAGTGTAAGTTTCTGGGCTTCTCAGAATGAGTAAGAAAGCAGACAGACACTGAGAAGCTAACTGGATCACCGTATCTGTAGTGACAGCAGTGTTAAGGAAACAGCAGCCTTGCTTTTGGCTCAGCCTTTCTATGTATTGTCCTTGTGTCTGAGCAG
Seq C2 exon
GTGGAAAAGGAACTCCTTCAGGAACCCCAGCGACCTCTCCTCCCCCAGCCCCGCCTTGTCCCCAAGACGACTGTGCGCACGGTCCAGCCTCCCAGGCCTCAGCCACACCCCCCAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011470:ENSRNOT00000016904:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF043887=Hamartin=FE(5.3=100)
A:
NA
C2:
PF043887=Hamartin=FE(5.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTTGGAGCCCATCTGCAGTC
R:
CTGGGAGGCTGGACCGTG
Band lengths:
204-450
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]