BtaINT0154285 @ bosTau6
Intron Retention
Gene
ENSBTAG00000010477 | TTC21A
Description
tetratricopeptide repeat domain 21A [Source:HGNC Symbol;Acc:HGNC:30761]
Coordinates
chr22:12508508-12508780:+
Coord C1 exon
chr22:12508508-12508646
Coord A exon
chr22:12508647-12508676
Coord C2 exon
chr22:12508677-12508780
Length
30 bp
Sequences
Splice sites
5' ss Seq
CAGGAAACA
5' ss Score
0.69
3' ss Seq
TTTGAGTTTCCATTTTGCAGTCA
3' ss Score
5.41
Exon sequences
Seq C1 exon
NCCCTAACTGTCTTCCCTAGCCTGACTTCGAGCAGACACACCCCCTCTTCTCCTGCAGGATGGGGCAGGGGACAGGCACTGGCTGGGGCTCCGAACCCAGCCCCCATCCTCCCCCAACAGCCCCCTCCCCAGGGGCCAG
Seq A exon
GAAACACTACTTTGAGTTTCCATTTTGCAG
Seq C2 exon
TCAAAGACATCCCATCCATGATGAATGATGTCAAGTGCTTACTTTTGCTGGCCAAGGTTTACAAGAGTCATAAAAAAGAAGATGTGACGGAAACTTTGAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010477:ENSBTAT00000048382:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.745 A=NA C2=0.200
Domain overlap (PFAM):
C1:
PF134141=TPR_11=PD(7.0=8.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACCCAGCCCCCATCCTC
R:
TCTTGTAAACCTTGGCCAGCA
Band lengths:
112-142
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]