HsaINT0174154 @ hg19
Intron Retention
Gene
ENSG00000168026 | TTC21A
Description
tetratricopeptide repeat domain 21A [Source:HGNC Symbol;Acc:30761]
Coordinates
chr3:39172192-39172586:+
Coord C1 exon
chr3:39172192-39172330
Coord A exon
chr3:39172331-39172482
Coord C2 exon
chr3:39172483-39172586
Length
152 bp
Sequences
Splice sites
5' ss Seq
TTGGTGAGG
5' ss Score
6.9
3' ss Seq
TTTGAGTTTCCATTTAACAGTCC
3' ss Score
4.93
Exon sequences
Seq C1 exon
GCAATTGAGTATTATGAGGCTGCCCAGAAGATTAATGGACAGGACTTTCTGTGCTGCGATCTGGGCAAACTGCTCCTGAAGTTAAAGAAGGTCAATAAAGCAGAAAAAGTTTTGAAGCAGGCACTGGAACATGACATTG
Seq A exon
GTGAGGCAGCATTGTAACCCATTTCTAGCATTTGGAGCAGACATACTCCTCCCCCATTCCCCATTAGCTGAAGTCCTGATCCCAGCGCTCCCCACCAACACAGCTTCCCAGGAGCCAGTGAACTAACACTAATTTGAGTTTCCATTTAACAG
Seq C2 exon
TCCAAGACATCCCATCCATGATGAATGATGTTAAGTGCCTGCTTTTGCTGGCAAAGGTTTACAAGAGCCATAAAAAAGAAGCTGTGATAGAAACTTTGAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000168026-TTC21A:NM_145755:18
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134141=TPR_11=PD(18.5=25.5),PF134141=TPR_11=PU(40.6=59.6)
A:
NA
C2:
PF134141=TPR_11=FE(49.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAATTGAGTATTATGAGGCTGCC
R:
TTGTTCAAAGTTTCTATCACAGCT
Band lengths:
242-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)