HsaEX0067820 @ hg19
Exon Skipping
Gene
ENSG00000168026 | TTC21A
Description
tetratricopeptide repeat domain 21A [Source:HGNC Symbol;Acc:30761]
Coordinates
chr3:39171570-39174731:+
Coord C1 exon
chr3:39171570-39171642
Coord A exon
chr3:39172192-39172330
Coord C2 exon
chr3:39174543-39174731
Length
139 bp
Sequences
Splice sites
3' ss Seq
TATTTACTGTTTGCACTAAGGCA
3' ss Score
4.03
5' ss Seq
TTGGTGAGG
5' ss Score
6.9
Exon sequences
Seq C1 exon
TGAGCTCTGTGAACATCTGCCTGGCCCCCACACCAGCCTGCTACTGGGCGATGCCTTAATGAGCATTCTGGAG
Seq A exon
GCAATTGAGTATTATGAGGCTGCCCAGAAGATTAATGGACAGGACTTTCTGTGCTGCGATCTGGGCAAACTGCTCCTGAAGTTAAAGAAGGTCAATAAAGCAGAAAAAGTTTTGAAGCAGGCACTGGAACATGACATTG
Seq C2 exon
GCCTTGGACCTCCAGTCTCGGATACTGAAGCGAGTTCCACTGGAGCAACCAGAAATGATTCCCTCCCAGAAGCAACTGGCAGCCTCTATCTGCATCCAATTTGCAGAGCACTACCTGGCAGAGAAAGAGTATGACAAGGCGGTACAGTCTTATAAGGATGTCTTCTCCTACTTGCCAACTGACAATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000168026_MULTIEX2-2/3=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134141=TPR_11=PU(21.5=56.0)
A:
PF134141=TPR_11=PD(18.5=25.5),PF134141=TPR_11=PU(40.6=59.6)
C2:
PF134141=TPR_11=PD(7.2=7.9),PF145591=TPR_19=PU(36.8=39.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTGTGAACATCTGCCTGGC
R:
TGGCAAGTAGGAGAAGACATCCT
Band lengths:
246-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)