MmuEX6069863 @ mm10
Exon Skipping
Gene
ENSMUSG00000032514 | Ttc21a
Description
tetratricopeptide repeat domain 21A [Source:MGI Symbol;Acc:MGI:1921302]
Coordinates
chr9:119958238-119959075:+
Coord C1 exon
chr9:119958238-119958348
Coord A exon
chr9:119958687-119958825
Coord C2 exon
chr9:119958969-119959075
Length
139 bp
Sequences
Splice sites
3' ss Seq
ATGTCCTGTTTGCACAAAAGGCC
3' ss Score
3.82
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
CCTGAGAAGGCCCTGGAGGTGTATGACGAGGCCTATAGAAAGAACCCTCACGATGCCTCCTTGGTCAGCAGGATCGGACAGGCCTACGTGAAGACCCACCAGTACGCCAAG
Seq A exon
GCCATTAATTACTACGAGGCTGCCCAGAAGATCAGCGGGCAGGACTTCCTGTGCTGCGAGCTGGCCGAGCTCCTCCTCAAGCTGAAGAAATACCACAAGGCAGAGAAGGTGCTGAAGCAGGCCTTGGAGCGAGACTCAG
Seq C2 exon
GGGTCAAGGACATCCCATCCATGATAAATGAGGTCAAGTGCTTGCTTTTGTTGGCAAAGGTTTACAAGAGCCACAAGAAGGAAGAGGTGATGGAAACCCTGAATCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032514-'20-32,'20-28,25-32=AN
Average complexity
A_C1
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134141=TPR_11=FE(55.4=100)
A:
PF134141=TPR_11=PD(18.5=25.5),PF134141=TPR_11=PU(40.8=61.7)
C2:
PF134141=TPR_11=FE(49.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGAGAAGGCCCTGGAGG
R:
CAGATTCAGGGTTTCCATCACCT
Band lengths:
218-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types