RnoEX0094634 @ rn6
Exon Skipping
Gene
ENSRNOG00000034089 | Ttc21a
Description
tetratricopeptide repeat domain 21A [Source:RGD Symbol;Acc:1308806]
Coordinates
chr8:128646862-128647636:+
Coord C1 exon
chr8:128646862-128646972
Coord A exon
chr8:128647296-128647434
Coord C2 exon
chr8:128647530-128647636
Length
139 bp
Sequences
Splice sites
3' ss Seq
TATGTCCTGTTTGCGCTAAGGCC
3' ss Score
5.64
5' ss Seq
CCGGTGAGG
5' ss Score
9.35
Exon sequences
Seq C1 exon
CCTGAGAAGGCCCTGGAGGTGTATGACGAGGCCTACAGAAAGAACCCTCACGACGCCTCCTTGGTCAGCAGGATTGGACAAGCCTACGTGAAGACCCACCAGTATGCCAAG
Seq A exon
GCCATTAATTACTACGAGGCTGCCCAGAAGATCAGCGGGCAGGACTTCCTGTGCTGCGAGCTGGCCGAGCTGCTCCTGAAGCTGAAGAAATACCACAAGGCAGAGAAGGTGCTGAAGCAGGCCTTGGAGCGAGACTCCG
Seq C2 exon
GGGTCAAGGACATCCCGTCCCTGATGGATGAGGTCAAGTGCTTGCTTTTGTTGGCAAAAGTTTACAAGAGCCATAAGAAGGAAGACGTGATGGAAACGCTGAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000034089-'20-21,'20-20,21-21
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134141=TPR_11=FE(55.4=100)
A:
PF134141=TPR_11=PD(18.5=25.5),PF134141=TPR_11=PU(40.8=61.7)
C2:
PF134141=TPR_11=FE(49.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGAGAAGGCCCTGGAGG
R:
CTGGTTCAGCGTTTCCATCAC
Band lengths:
218-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]