DreEX6096677 @ danRer10
Exon Skipping
Gene
ENSDARG00000102541 | TTC21A
Description
tetratricopeptide repeat domain 21A [Source:HGNC Symbol;Acc:HGNC:30761]
Coordinates
chr24:41146065-41147718:-
Coord C1 exon
chr24:41147611-41147718
Coord A exon
chr24:41146242-41146383
Coord C2 exon
chr24:41146065-41146165
Length
142 bp
Sequences
Splice sites
3' ss Seq
GTGTTTGTGATGTGTTTCAGGCT
3' ss Score
9.41
5' ss Seq
CGAGTACAG
5' ss Score
-4.05
Exon sequences
Seq C1 exon
CCAGAGGAAGCCGCCAGGATCTACCAGGAAGTTGAGACGATTGCTCCAAAATGCACGTTAACCAAGAAAATAGGCCACGCTTTAGTGAAGGCTCATGAATATGACAAG
Seq A exon
GCTGTGTGTTATTACGAGACTGCTCTGAAGAGGGATTCTCTGGACTGTGTGTTGAGTTTAGAGCTTTCTGAACTGCTGCTGAAGCTGAAACGCTTTAACAGAGCTCAGCAGGTCCTGGAACAGGCGCTGGATCATCAGCCGA
Seq C2 exon
CTTGTGCATTGGCTGCAATGATGAATGATGTTAAAGCTCTCCGAGTGTTGGTTAAAGTGCTGCGGGCCAGGGATGAGTCTGCTCTGGACGTCATACAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000102541-'12-15,'12-14,15-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134141=TPR_11=PU(28.4=52.8)
A:
PF134141=TPR_11=PD(68.7=95.8)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGAAGCCGCCAGGATCTA
R:
TGTATGACGTCCAGAGCAGACT
Band lengths:
202-344
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]