HsaINT0174152 @ hg19
Intron Retention
Gene
ENSG00000168026 | TTC21A
Description
tetratricopeptide repeat domain 21A [Source:HGNC Symbol;Acc:30761]
Coordinates
chr3:39171570-39171849:+
Coord C1 exon
chr3:39171570-39171642
Coord A exon
chr3:39171643-39171738
Coord C2 exon
chr3:39171739-39171849
Length
96 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
3' ss Seq
AAAGACACTTTCCCCACCAGCCC
3' ss Score
3.85
Exon sequences
Seq C1 exon
TGAGCTCTGTGAACATCTGCCTGGCCCCCACACCAGCCTGCTACTGGGCGATGCCTTAATGAGCATTCTGGAG
Seq A exon
GTAAGTGAGAGGCCTCACAGCCTTGCCAAGTGGCCCCCCAGTCTCCCTTCTCCAGTGGGAGAGAAGAGGAAGACCCAAAGACACTTTCCCCACCAG
Seq C2 exon
CCCGAGAAGGCCCTGGAGGTCTATGATGAGGCCTATAGACAGAACCCACATGACGCCTCCCTGGCCAGCAGAATTGGGCACGCTTATGTGAAGGCCCACCAGTATACTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000168026-TTC21A:NM_145755:16
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134141=TPR_11=PU(21.5=56.0)
A:
NA
C2:
PF134141=TPR_11=FE(55.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTGTGAACATCTGCCTGGC
R:
CTGGTGGGCCTTCACATAAGC
Band lengths:
171-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)