BtaINT0154284 @ bosTau6
Intron Retention
Gene
ENSBTAG00000010477 | TTC21A
Description
tetratricopeptide repeat domain 21A [Source:HGNC Symbol;Acc:HGNC:30761]
Coordinates
chr22:12507670-12507965:+
Coord C1 exon
chr22:12507670-12507742
Coord A exon
chr22:12507743-12507854
Coord C2 exon
chr22:12507855-12507965
Length
112 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
GCAGACCCTTTCCCCACCAGCCA
3' ss Score
3.69
Exon sequences
Seq C1 exon
GGAGCTCTGTGAACATCTGCCTGGCCCCCACACCAGTCTGCTTCTGGGTGATGCTTTCATGAACATTCAGGAG
Seq A exon
GTGAGTGAAGGTCTCGTGACCACACTAAGTGGCTGCACCCCGCACCCACCCTGCCCAGTCTTGCTTCTCCAGTAAGGGAGAAGAGAGAGATGGCAGACCCTTTCCCCACCAG
Seq C2 exon
CCAGAGAAGGCCCTGGAGGTCTACGATGAGGCCTACAGAAAGAACCCACACGACGCATCCCTGATCAACCGGATCGGGCAGGCTTATGTGAAGACCCACCAGTACACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010477:ENSBTAT00000048382:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.040 A=NA C2=0.108
Domain overlap (PFAM):
C1:
PF134141=TPR_11=PU(24.6=56.0)
A:
NA
C2:
PF134141=TPR_11=FE(63.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGCTCTGTGAACATCTGCC
R:
TGGTGTACTGGTGGGTCTTCA
Band lengths:
182-294
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]