DreINT0021845 @ danRer10
Intron Retention
Gene
ENSDARG00000102541 | TTC21A
Description
tetratricopeptide repeat domain 21A [Source:HGNC Symbol;Acc:HGNC:30761]
Coordinates
chr24:41147540-41147867:-
Coord C1 exon
chr24:41147795-41147867
Coord A exon
chr24:41147719-41147794
Coord C2 exon
chr24:41147540-41147718
Length
76 bp
Sequences
Splice sites
5' ss Seq
CAGGTACGT
5' ss Score
10.65
3' ss Seq
AACACATCTGCTTCTTAAAGCCA
3' ss Score
3.65
Exon sequences
Seq C1 exon
AGAAATAACTGAGCAGCTTCCAGGAGCTCATACTAGCATCTTACTGGCTGATGCCTTCATGAAGATACACCAG
Seq A exon
GTACGTTTACATGATTTGAGATTTTGACGTATTTAACAGCATCTTTATAAATCATGAACACATCTGCTTCTTAAAG
Seq C2 exon
CCAGAGGAAGCCGCCAGGATCTACCAGGAAGTTGAGACGATTGCTCCAAAATGCACGTTAACCAAGAAAATAGGCCACGCTTTAGTGAAGGCTCATGAATATGACAAGGCAAGTGGCTCTTACAGGTTTAGATGAATATTTGATTATGAACAGGTTCATTAAAGTCCGCTTGAAATAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000102541:ENSDART00000159738:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAGCTTCCAGGAGCTCATA
R:
AAGAGCCACTTGCCTTGTCAT
Band lengths:
183-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]