RnoINT0157548 @ rn6
Intron Retention
Gene
ENSRNOG00000034089 | Ttc21a
Description
tetratricopeptide repeat domain 21A [Source:RGD Symbol;Acc:1308806]
Coordinates
chr8:128647296-128647636:+
Coord C1 exon
chr8:128647296-128647434
Coord A exon
chr8:128647435-128647529
Coord C2 exon
chr8:128647530-128647636
Length
95 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGG
5' ss Score
9.35
3' ss Seq
TGACTGGTGGCTCCTTCTAGGGG
3' ss Score
6.96
Exon sequences
Seq C1 exon
GCCATTAATTACTACGAGGCTGCCCAGAAGATCAGCGGGCAGGACTTCCTGTGCTGCGAGCTGGCCGAGCTGCTCCTGAAGCTGAAGAAATACCACAAGGCAGAGAAGGTGCTGAAGCAGGCCTTGGAGCGAGACTCCG
Seq A exon
GTGAGGTGGCCTTGGAACTCAGTCCCAGCCCCGTATCCCTGGGCCCTCCCCATCAGCCCATGGGCTAGACTACACTGACTGGTGGCTCCTTCTAG
Seq C2 exon
GGGTCAAGGACATCCCGTCCCTGATGGATGAGGTCAAGTGCTTGCTTTTGTTGGCAAAAGTTTACAAGAGCCATAAGAAGGAAGACGTGATGGAAACGCTGAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000034089:ENSRNOT00000043831:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134141=TPR_11=PD(18.5=25.5),PF134141=TPR_11=PU(40.8=61.7)
A:
NA
C2:
PF134141=TPR_11=FE(49.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTACTACGAGGCTGCCCAGAA
R:
GCAAGCACTTGACCTCATCCA
Band lengths:
176-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]