BtaINT0154299 @ bosTau6
Intron Retention
Gene
ENSBTAG00000010477 | TTC21A
Description
tetratricopeptide repeat domain 21A [Source:HGNC Symbol;Acc:HGNC:30761]
Coordinates
chr22:12485705-12490745:+
Coord C1 exon
chr22:12485705-12485827
Coord A exon
chr22:12485828-12490587
Coord C2 exon
chr22:12490588-12490745
Length
4760 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGC
5' ss Score
10.08
3' ss Seq
TTCTGTTTGGCCTTCAACAGGTG
3' ss Score
9.25
Exon sequences
Seq C1 exon
GGCTATGTGCTCAGAGGCTGGGTGGACCTCAGCTCAGACAAACCCCACACGGTGAAGAAGTCCATCAAGTACCTGGAGCATGGCATTCAGGACACCAAAGACATCCTGGGGCTGATGGGAAAG
Seq A exon
GTAGGCAGTGGGGAGGCGAGGGGTAGGGGTGTCCCCAGCCAGGGGCCTCAGTCTCTAGGCCCCATCTGGTGGATGAAGAGCAGAGGCCCGGAGAGGGCAGGGCCACAGAGCCGCCCTGGGCCCACCCCAGGCCTTCCTGCACTCCGCCCAGTCTGAGTGTCTGTCTGTCTCCCGCCTAAGATCTCCTCAGGACCTATGCTCCCTGGGCTCTGGTGGGCTTTTTTCTCTCTATCCCTTTTGTTTTCACCCACTGTCCCTTTTCTCTACGTTTTCCTTTCTCATCTCACCTCTTAAACTTACTCACTTGGTCATAAGAGAAAGAAGGTATGTGTTTTGTATTTTCTGATCTTAAATTGTTGCCTTTTTCTGATGTGAGCCTCGCTGAATGAATCTATGAGAGAAAAATCATGCTCTTGCCTGCTTCTGATTGTATATACCGATCTTATAAAACGAATATGTTTGCACACATGCTCAGTCGTGTCCGATTCTTGCAACCCCATGGACTGTAGCCCACCAGGCTCCTCTCTCCATGGAATTTCCCAGGCAAGAATACTGAAGTGGGTTGCCATTCCCTCCTGCAGGGGACCTTCCCAGCCCAAGGATCAAACCCACATCTCTGGTGTCTTCTGCATTGGCAGACAGATTTTTTTTTTTTTTAACCACTAGTGCCACCTGAAATGAATGCATGCTCATTGAAAAACCAGAAGTCTAAAAAAGTCAAAATGGCATCCTTTTAGACCTGCCACCCCCGAACAACCCACGACAATATTTTAGGGCCATGTCTCCTCATCTCTCTGCTGCGAGTTGTTTCAGGATGCGCCTTCAGTGGTTCGCTGGGCAGCAGAGGCCATGAAGTTATCACAGAGGAGGATTATCAGGTTGTGCCCTTGGGTCGGACATGTGTAGGAAAAGTGAAAGAAGTAGGAGGGAGAGCTTGGAGTGTGAAGCAGCCCTAGAGGTGGCCTCAGCCAGCTCTGCTTAGAACTGTGGAGCTGGGGTGGCCCTGCCCTGAGCCCCTCACTGACAAGATGTTGGCTGTAGGCTGCCCCTCGGGGATGGGGACAACCTGGTACCTGGGGGCTCCCTGAAGCCACAGGGGAGCCCAGGAGGGAGGCTCCTCCAAGAGATATCAACATCCACTGCCCCCCCAGGTACTGAAGGGGGTCACACACAGCACCTGCTACAGGCCAGCAGACAGGGGGATTTCATATGGTTATTATCACAGGGCATCTTACCATTTGGTCTCTCTCTTCATGTAGGGTTTCATAAGCACGTGTCATTTTGACATAAAGTCAGGCCACTACTGTGTGGACCTAATATAATTTGCCAACTTTGCCTCCTACTGTTTGTATATTAAGGTTGTTTTTAGTTGTACATGTAGAAAGAAAGCTGCAGCAAACACGTTTATACATAAATTTTTATTTAGAATACTCCTCTTCTTGTTTTTAGTAAGTCTTTTAATGGAAGGTTACTGTAGGCCAAAGCCAGCCTTTTGGAGTCCAATTTCAAGCCTTTGGGAAGCATTGCCCTCTGCCCCTCAGGCATGTGTCATGACTTGCCCAGGAGAGCTAGTGGCTGGCTGCCTGCAGAGACCGTGACCCAAGGCTGGTGAGCCTTGACAGAGAAAAAGTCCCATAGATTTGATATGTGGAAAGAGGGTTACCTGCAAACTGTTGCTGACTCCCGGTAGCTGCATCGGCCCCAGTGAGCAGTTTTCAGTGGTGAATTTTAGGAAAGTGAATGGGAAATGATGGCAATGCCAAAAAATGCTCAAACTACCGCACAATTGCACTCATCTCACATGCTAGTAAAGTAATGGTCAAAATTCTCCAAGCCAGGCTTCAGCAATATGTGAACCGTGAACTTCCTGATGTTCAAGCTGGTTTTAGAAAAGGCAGAGGAACCAGAGATCAAATTGCCAACATCTGCTGGATCATGGGAAAAGCAAGAGAGTTCCAGAAAAACATCTATTTCTGCTTTATTTACTATACCAAAGCCTTTGACTGTGTGGATCACAATAAACTGTGGAAAATTCTGAAAGAGATGGGAGTACCAGACCACCTGATCTGCCTCTTGAGAAATTTGTATGCAGGTCAAGAAGCAACAGTTAGAACTGGACATGGAACACCAGACTGGTTCCAAATAGGAAAAGGAGTACGTCAAGGCTGTATATTGTCACTCTGCTTATTTAACTTATATGCAGAGTACATCATGAGAAACGCTGGACTGGAAGAAGCACAAGCTGGAATCAAGATTGCCGGGAGAAATAACAATAACCTCAGATATGCAGATGGCACCACCCTTATGGCAGAAAGTGAAGAGGAACTAAAAAGCCTCTTGATGAAAGTGAAAGTAGAGAGTGAAAAAGTTGGCTTAAAGCTCAGCATTCGGAAAACGAAGATCATGGCATCTGGTCCCATCACTTCATGGCAAATAGATGGGGAAACAGTGGAAGACTTTATTTTTTTGGGCTCCAGGATCACTGCAGATGGTGACTGCAGCCATGAAATTAAAAGACGCTTACTCCTTGGAAGGAAAGTTATGACCAACCTAGATAGAATATTCAAAAGCAGAGATATTACTTTGCCAACAAAGGTTCGTCTAGTCAAGGCTATGGTTTTTCCTGTGGTCATGTATGGATGTTAAGAGTTGGACTGTGAAGAAGGCTGAGCACCGAAGAATTGATGCTTTTGAACTGTGGTGTTGGAGAAGACTCTTGAGAGTCCCGTGGACTGCAAGGAGATCCAACCAGTCCATTCTAAAGGAGATCAGCCCTGGGATTTCTTTGGAAGGAATGATGCTAAAGCTGAAACTCCAGTACTTTGGCGACCTCATGTGAAGAGTTGACTCATTGGAAAAGACTCTGATGCTGGGAGGGATTGGGGGCAAGAGGAGAAGGGGACGACAGAGGATGAGATGGCTGGATGGCATCACTGACTCGATGGACATGAGTCTGAGTGAACTCCGGGAGTTGGTGATGGACAGGGAGGCCTGGCCTGCTGCGATTCATAGGGTCGCAAAGAGTCAGACACGACTGAGCAACTGAACTAAACTGAACTGATGTAGAAATTGGAAGTGCCGAATCTCTCCACTAGGGGGCGCCGTCCCATGACTTTGCTCTGTCCCAGGCCTGCAGGGGCTCAGCTATCTCAGCTATCTCCTGTAGTCCCTGCCTTCTTGTTCAGTCCCTCAGTTGTGTCCAGCTCTTTGCGATCCCATGGACTGCAGCACGCCAGGCTTCCCTGTCCTTCACCATCTCCCAGAGCTTGCTCAAACTCATGTCCATTGAATTGGTGATTCCATCCAGCCATCTCATCCTCTGTTGTCCCCTTCTCCTCCTGCCTTCAATCTTTCCCAGCATCCGGGAAATGAGTCAGCTCATTTGCATCAGGTGGCCAAAGTATTGGAGCTTCAGCTTCAGCATCAGTCCTTCCAATGAATATTCAGGATTGATTTCCTTTAGGATTGACTGGCTTGATCTCCTTGCAGTCCAAGGGACTCTAAAAGTCTTACCCAACACCACAGTTTGAAAGCATCAGTTCTTTGGCACTCAGCCTTCTTTATGGCCCAACTCTCACATCCACACGTGACTACTGGAAAAACTATACCTTTGACTAGATGGACCTTTGTTGGCAAAGTAATGTCTCTGGTTTATAATATGCTGTCTAGATTTGTCATAGCTTTTCTTCCAAGAAACAAGCGTCTTTTCATTTTGTGGCTGCAGTCACCATCTTCTGGAGCCCAAGAAAATTAAGTCTGTCACTGTTTCCATTGTTTCCCCATCTATTTGGCATGAAGTGATGGGACCAGATGCCATGATCTTGGTTTTTTGAATGTTGAGTTTTAAGCCAGCTTTTTCACTCTCCTCTTTCACCTTCATCAAGAGGCTCTTTAATTCCTCTTTGCTTTCTGCCATAAGGGTGGTGCCATCTGCATATCTGAGGTTATTGATATTTCTCCCAATTGATATTTCTGGCAATCTTGATTCCAGCTTGTGCTTCATCCAGCCCGACATTTCACATGATGTACTCTGCCTATAAGTTAAACAAGCAGGGTGACAATATACAGCCTTGACGTACTCCTTTCCCAATTTGTTGCTTCTTGACCTGCATACAGGTTTCACAGGAGGAAGGTAAGGTGGTCTGGTATTCCCATCTCTTGAAGAATTGTCCATAATTTGTTGTGATCCACATAGTCAAAGGCTTTAGCATAGTCAATGAAGCAGAAGTAGATATTTTTCTGGAATTCTCTAGCTTTTTCTACAATCCAGTGGATGTTGACAATTTGATCTCTGGTTCCTCTGCCTTTTCTAAATCCAGCTTGTCCAACTGGAAGTTCTCGGTTCCCATACTATTGAAACCTAGTTTGGAGGATTTTGAGCATTACTTTGGTAGCATGTGAAATGAGTGCAATTGTGCAGTAGTTTGAACATTCTTTGGCATTGCTGTTCTTTGGAATTGAAATGAAAACTGACCATTTCAAGTCGTATGGCCACTGCTGAGTTTTCCAAATTTGCTGGCATATTGAGTGCAGCACTTTAACAGCATCATCTTTTAGGATTTGAAATAACTCAGCTGGAATTCCATTCCCCTGCCTTGCCTGTCAGAAAACCCCAAGACTGCTGTGGACCCTATTTGTTACTCTGAATGATGGCTTCTGCCCACTTGTCAGGCTCTGCTGCTGTCTTGGTGGGGACACTGACACCCACTGCTCATTTTTGGTGGGCACTGATGAGGGCTCTTCTGTTTGGCCTTCAACAG
Seq C2 exon
GTGATGTACTTCATGATACTGCAGAACTACTCGGGGGCCCTTGAGGTGGTGAACCAGATCACCGTCACCTGCGGGAGCTTCCTGCCTGCCTTGGTCCTAAAGATGCAGCTGTTCCTGGCTCGGCAGGACTGGGAGCAGACGGTAGAAATGGGACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010477:ENSBTAT00000048382:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134241=TPR_12=PD(6.8=9.8)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]