HsaINT0174168 @ hg19
Intron Retention
Gene
ENSG00000168026 | TTC21A
Description
tetratricopeptide repeat domain 21A [Source:HGNC Symbol;Acc:30761]
Coordinates
chr3:39153949-39156233:+
Coord C1 exon
chr3:39153949-39154071
Coord A exon
chr3:39154072-39156075
Coord C2 exon
chr3:39156076-39156233
Length
2004 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGC
5' ss Score
7.93
3' ss Seq
TTCTGTCTGGCTCCCAACAGGCA
3' ss Score
10.04
Exon sequences
Seq C1 exon
GCCTATGTGCTCAGAGGCTGGGTGGACCTGACCTCAGACAAGCCCCACACTGCGAAGAAAGCCATTGAGTACCTGGAACAAGGAATTCAGGACACCAAAGATGTGCTGGGGCTGATGGGAAAG
Seq A exon
GTGGGCAGTGGAAAAGGGAGAGGTGGAAGTATTCCTGGCCAGGCCACTGGAACCAGAGACCCACCAGGTACCCCCAGGCCAAACCCTCGTAGTCTCCAGATGCCTCATCTCGTAGATAAAGAGCAGAGGCCCAGAGAGGTTCAGCAACCAATCCAGGGTTACACAGCAGTCCAAGGTCCACTCTACTTCTCAGATTTCTTCCTGCTTGATCTGAGTTTCTGTCTCATTTGCATGGGGGTCTTCTCAGGGTCACTTTCTTAAGGTCTATCCTTCCTTGACCCTCTCAGGCTTTCTCTCTGCCTCTGTGTTAGTTTCACTCAGTGCCCTTCTCCCTTTCTTCTTTTATTTTGACCTTCCCATTTCACTTCTTTCTACCTGTTAAATTCATTTAGTGTGCCGTAAGAGAAGGGAGGTATATATTTTATATGTTCTGTGTTTTCTGATCTTAAGTTTCTTTTTTCTCTTGTGAACCTCATGGAATTAATCTTTGAGAGAAAAAATGTCCTCGTATTTTCTTCTGTTTGCATATATTTTTATTATAAAAGAATACATACTTATTTAAGAAAACAGAAGCCTAAAAAAAGTCAACAGATGAATTAAAATGGCAGGCTTAGTCTTACCGCTCCAAGACAAATGTTAGTATTTTAGGGCAATGTCTTCTAGTCTTCTTTCTATACTTGGGTCCAGGGTGTGTATTAGGTTGGTTTTCTGGCTGGCAGAAAGCAATGGAGATTATTGTGAGCCAGCTTATCACAGAGCACCCTTGGGGCCAGCACCTGTGGAAAGAGAAGGCGGGCTGTGAATAGTCACAGCAAAGGCCACAGCCTACTCTTTGGGGAACTCTGGAGCCGGGATGCCCCTTCAGTGAGCTCCCCATCAGTGCCTTGACACTGGAGGTGGGCTGCCCCAGGGACAGGTGTGACCTGGGACAAAGCAGCTCCCTTCAACCATGGGTGATCCCTGGAGGGAGACTCCATGGAGAGCCATCAGCCACCAACTCTCCTGCTCCTGATGGTAGGGGGTGGGTCACACACAGCAGTCACTGTGGGGTGGGAGACAGTGTTGGTCTATAACGTAGTTTTCACCCTAGGGCATATTGTCATTTAGTTTGTTTTTCTTCATGTAATATTTTCTTTGTGTAATATTCAAAATGTCAGTTTGAACATGGATATAAAGCCAGTCTTCTACTGTATGAGCATAATGTAATTTACCAACCCAGTCCCCTATTGTTTGGATATTGGGATTGTTTCCAGTTATGCACTTAAAGTGCTTCAATGAACACATTTATGCGTAAGTCTTCATTATACGGAATAATCCTCTTGTTTTTAATGACGAGTCTCTTAATGGGGGTTACTGTAGGTCTAAGGGAAGCCGTCCTTTCAGAGTCCAATTTCAAGTCTTTTAGAAGCATTGCCCCCTGGCCCTTAGGGCACCTGTGTCATGACCCTTTGAGGAGAAACTGGTGGCTGGTGTTGGCCTGCAGAGGCCATGACCACAGCCCAATAGGCCTTGACAGAACAACAACAAAAAAAACGCCACAACCTTGCTATAGAAGTAGTTGCCAGAAAACCCTAACTGACTCAGAATTGCTAAACTGGGCCTTGGCGAGCAATTTCAGTGAGGAAATATGGAAAAGTGAATGGGAAATGAATGGAAAATGTATGGAACTGGAAAGCACCCAGTGACCTCACCTCTCCCCTTCAGGGTGACCTCACATGGCCTTACCCTATCCCAGGCCTGCTAAGTTTTCCAAGCTTGAGGCTTAGCTATCTCCCCAAAGCCCCTGCTCATCCTGTCCGAGAACCCAAGACTGTTGTAAACCTGGATATGTCACTCCTTCTCCCGGGAACTTTGAGGGGCTACTGGCCCAGCTGAGAGGACCCACGGTGCCCATGTGTCAGGTTCTGTTCCTGTTTTCATGGAGACACAGAGACAACCCCCCTCCAGCAAACTCCCTTCATGGGCACTCCCTTCACGGAGGCTCTTCTGTCTGGCTCCCAACAG
Seq C2 exon
GCAATGTACTTCATGATGCAGCAGAACTACTCAGAGGCCCTGGAGGTGGTGAACCAGATCACTGTGACTTCAGGGAGCTTCCTGCCAGCCCTCGTCCTGAAGATGCAGCTGTTCTTAGCTCGGCAGGACTGGGAGCAGACAGTAGAAATGGGACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000168026-TTC21A:NM_145755:5
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.166
Domain overlap (PFAM):
C1:
PF134241=TPR_12=PD(42.0=70.7)
A:
NA
C2:
PF134241=TPR_12=PD(32.2=35.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)