HsaEX0067816 @ hg19
Exon Skipping
Gene
ENSG00000168026 | TTC21A
Description
tetratricopeptide repeat domain 21A [Source:HGNC Symbol;Acc:30761]
Coordinates
chr3:39149195-39156233:+
Coord C1 exon
chr3:39149195-39149355
Coord A exon
chr3:39151520-39151630
Coord C2 exon
chr3:39156076-39156233
Length
111 bp
Sequences
Splice sites
3' ss Seq
TATGTGGACTGTCTTTGCAGAGC
3' ss Score
7.69
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
Exon sequences
Seq C1 exon
GGCTAGCAGCTCGGTTTCCAAGGACTGTAACGCCTTCAACCGCCCGCCGCGATAGAGTGCCCACGACCCTGCCTCGGGAATCCCGCTCTGCACCGCCCCACCAGACCCGGACTCGGAGCCGCGAGCGGCCCGAGATGAGCAGCAATGACTCCTCCCTTATG
Seq A exon
AGCACATCCAGGATGCCATCAGTGACCTGGAAAGCATCAGGCATCACCCAGACGTGTCCCTGTGCTCCACCATGGCCCTCATTTATGCTCACAAAAGATGTGAAATCATTG
Seq C2 exon
GCAATGTACTTCATGATGCAGCAGAACTACTCAGAGGCCCTGGAGGTGGTGAACCAGATCACTGTGACTTCAGGGAGCTTCCTGCCAGCCCTCGTCCTGAAGATGCAGCTGTTCTTAGCTCGGCAGGACTGGGAGCAGACAGTAGAAATGGGACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000168026_MULTIEX1-2/4=C1-C2
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.014 A=0.053 C2=0.166
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF134241=TPR_12=PD(32.2=35.8)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTAGCAGCTCGGTTTCCAAGG
R:
AGGAAGCTCCCTGAAGTCACA
Band lengths:
242-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)