DreEX6096670 @ danRer10
Exon Skipping
Gene
ENSDARG00000102541 | TTC21A
Description
tetratricopeptide repeat domain 21A [Source:HGNC Symbol;Acc:HGNC:30761]
Coordinates
chr24:41156146-41159908:-
Coord C1 exon
chr24:41159779-41159908
Coord A exon
chr24:41158411-41158521
Coord C2 exon
chr24:41156146-41156312
Length
111 bp
Sequences
Splice sites
3' ss Seq
AAAATGCTGCTGTGTTGCAGGTC
3' ss Score
7.92
5' ss Seq
TCGGTACGT
5' ss Score
10.06
Exon sequences
Seq C1 exon
CCGTTGATTATATATTATATGAGGGAGAGATACTACAGACATGCCATCAATACAGCTGCGAGGAGTTTAAAAGTGTACAATAATGATCCTGTGCTCCGTTTCTTCAAAGCTTTTGCAACTCTGATGGAAG
Seq A exon
GTCACTCACAGGAGGCTCTACAAGAGCTCATCCTGCTGAAGGATCATCCTCATCTGTCTCTGTGTTCAACAGTAGCTCTCATTTACGCACACAAACACTGTGAGACTGTCG
Seq C2 exon
ATGAAGATGCTGTGAATGAGCTGAACTCTGAGCTGAAGCGCTCTGGATCTACAGCCGGTGAAAGAGCGCTTTATTACGCAGCTCTGATCTACTGGATCCTCCAGATGAACCTCAAAGCTAAAACATGCATTAAAAAGATGCTGAAAATCTCGGAGACGTCACCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000102541-'1-3,'1-1,3-3=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.036
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCATCAATACAGCTGCGAG
R:
CTCAGGTGACGTCTCCGAGAT
Band lengths:
256-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]