RnoEX0094633 @ rn6
Exon Skipping
Gene
ENSRNOG00000034089 | Ttc21a
Description
tetratricopeptide repeat domain 21A [Source:RGD Symbol;Acc:1308806]
Coordinates
chr8:128624143-128626556:+
Coord C1 exon
chr8:128624143-128624272
Coord A exon
chr8:128625535-128625645
Coord C2 exon
chr8:128626390-128626556
Length
111 bp
Sequences
Splice sites
3' ss Seq
TATGTATACTCTTTCTGCAGACC
3' ss Score
9.01
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
Exon sequences
Seq C1 exon
GCTTCGATCATTTACTACTGCCAGGAAAAGTACTTCCACCACGTGCTGCAGGCTGCCAATGTGGGCCTAGAGAGGTACAGCTGCGACCCTGTGCTGCAGTTCTTCAGAGCTTATGGGGTCCTTGGGGAAG
Seq A exon
ACCGTATCCATGATGCCATCAGTGAGCTGGAGAGCCTCCAAAGCCACCCAGACACGTCCCTGTGCGCGGTCATCGCTCTGCTTTATGCTCACAAATGCTGTGACACCATTG
Seq C2 exon
ACGCAGAAGCAATTCAGGAGCTGGACAGCAGCTTGAAGGAAATTCGCAGGACGGCCAGTGGCATGGCACTGTACTACGCCAGCCTCTTCCTCTGGTTCATGGGTCACCACGACAAGGCCAGGGAGTACGTCGACCACATGTTAAAGGTCTCCAGTGGCTCCAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000034089-'2-2,'2-1,4-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAATGTGGGCCTAGAGAGGT
R:
CTCTTTGGAGCCACTGGAGAC
Band lengths:
242-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]