MmuEX6069875 @ mm10
Exon Skipping
Gene
ENSMUSG00000032514 | Ttc21a
Description
tetratricopeptide repeat domain 21A [Source:MGI Symbol;Acc:MGI:1921302]
Coordinates
chr9:119939167-119941299:+
Coord C1 exon
chr9:119939167-119939296
Coord A exon
chr9:119940416-119940526
Coord C2 exon
chr9:119941133-119941299
Length
111 bp
Sequences
Splice sites
3' ss Seq
TATGTACATTCTTTCTGCAGACC
3' ss Score
10.16
5' ss Seq
TCGGTGAGC
5' ss Score
9.1
Exon sequences
Seq C1 exon
GCTTCGATCATTTACTACAGCCAGGAAAAGTACTTCCACCATGTGCTGCAGGCTGCGAATGTGGGCCTAGAGAGGTACAGCAGCGACCCAGCCCTGCAGTTCTTCAGAGCGTATGGAATCCTTGGGGAAG
Seq A exon
ACCACATCCACGATGCCATCAGCGAGCTGGAAGGCATCCAAAGCCACCCAGACACGTCCCTGTGCGCGGTCATCGCCCTGCTTTCTGCTCACAAATCCTGCGACACCATCG
Seq C2 exon
ACATAGAAGCAGTTCAGGAACTGGAGAGCAGCTTGAAGGAAATTCGCAGGTCAGCCAGCAGCACTGCTCTGTACTACGCCAGCCTCTTCCTCTGGTTCATGGGTCACCACGACAAGGCCAGGGAGTATGTTGACCACATGTTGAAGGTCTCCAGCGGCTCCAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032514-'1-3,'1-2,2-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTACTTCCACCATGTGCTGCA
R:
CCGCTGGAGACCTTCAACATG
Band lengths:
258-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types