DreEX6038618 @ danRer10
Exon Skipping
Gene
ENSDARG00000012368 | ttc21b
Description
tetratricopeptide repeat domain 21B [Source:ZFIN;Acc:ZDB-GENE-031010-34]
Coordinates
chr9:50159637-50160261:-
Coord C1 exon
chr9:50160132-50160261
Coord A exon
chr9:50159929-50160039
Coord C2 exon
chr9:50159637-50159803
Length
111 bp
Sequences
Splice sites
3' ss Seq
CTGTTATTTTATTGTTGTAGATC
3' ss Score
9.56
5' ss Seq
CTGGTAGAT
5' ss Score
2.85
Exon sequences
Seq C1 exon
GCACTGATCTTATACTACTGCCAGGAAAAGTACTCCAGTCATGTCGTAGATGTTTCCAGTGAAGCTCAACGGAAATTCAGTCCGGATCCAATCTTTACATTCCTCCATGCTTATGGGTTGCTCATGCAAG
Seq A exon
ATCAAGTGCTGGACGCCATTCAGGAGCTGGAGATGCTGAAGGAGAGAAGAGACGTTTCACTTTGTGCGCTCATGGCTCTGGTTTATGCCCACAAGAAACGCCCAAACCCTG
Seq C2 exon
ATCGTGAAATCATACAGGATCTGGATGGACGGGTGAAGGAGGAGAGGAAAACGGCGAGTCCTAAAGCACTGTATTACGCGGGCATGCTGCTGTGGCTTCTGGGCCGCAATGACAAAGCAAGAGAGTATGTGGACAGAATGATCAAGATCTCCAGTGGCTCAAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000012368-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.089
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0771912=TPR_2=WD(100=60.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTTCCAGTGAAGCTCAACGG
R:
TTGAGCCACTGGAGATCTTGA
Band lengths:
242-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]