GgaEX1060936 @ galGal3
Exon Skipping
Gene
ENSGALG00000010956 | TTC21B
Description
NA
Coordinates
chr7:21132134-21133811:+
Coord C1 exon
chr7:21132134-21132263
Coord A exon
chr7:21132934-21133044
Coord C2 exon
chr7:21133645-21133811
Length
111 bp
Sequences
Splice sites
3' ss Seq
TTGGCTCCTGTTATCACTAGGTG
3' ss Score
8.83
5' ss Seq
CAGGTATGC
5' ss Score
9.37
Exon sequences
Seq C1 exon
GCCCTGCTCAACTACTACTGCCAGGAATGCTACTTCCACCACGTCCGGGCTGCGGCGGAGGAGGCGCTGGGCCGGCTGGGCAGCGACCCGGTGTTCCAATTCTACCGGGCGTACGGCGCGCTGCGCACAG
Seq A exon
GTGATGTCCAAGAGAGTATTCGACAACTGGAATCCATTAAGAACAAACAGGAGGTGTCACTTTGTGCAATGATGGCGCTGATCTACGCCCACAAAAAGAGCCCTAATCCAG
Seq C2 exon
ATCGGGATGCTATTCTAGAGTTGGATACAAAACTGAAGGAGCAACGTAAAACAGCAGGACAGCAGGCTCTTTACTTCGCTGGCTTATTTTTGTGGCATCTTGGTCGTGAAGACAAAGCCCGTGAATACGTTGATAGGGTGATCAAAGTTTCTAATGGAGATAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010956-'1-3,'1-2,2-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.030
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF134241=TPR_12=PU(54.9=69.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCTGCTCAACTACTACTGC
R:
GGGCTTTGTCTTCACGACCAA
Band lengths:
250-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]