BtaEX0038096 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016512 | TTC21B
Description
Bos taurus tetratricopeptide repeat domain 21B (TTC21B), mRNA. [Source:RefSeq mRNA;Acc:NM_001102108]
Coordinates
chr2:30438818-30443091:+
Coord C1 exon
chr2:30438818-30438947
Coord A exon
chr2:30439037-30439147
Coord C2 exon
chr2:30442925-30443091
Length
111 bp
Sequences
Splice sites
3' ss Seq
TTTGTGGTTTTGATTTTCAGGTA
3' ss Score
10.08
5' ss Seq
CAGGTATAG
5' ss Score
8.73
Exon sequences
Seq C1 exon
GCTTTGATTAATTACTACTGTCAGGAGAGATATTTCCACCATGTGTTACTTGTTGCCAGTGAGGGAATGAAGAGCTACGGCAGTGACCCAGTCTTCAGGTTTTATCATGCCTATGCTACGTTAATGGAAG
Seq A exon
GTAAAATTCAAGAAGCTCTTCGAGAATTTGAGGCTATTAAAAATAAACAAGATGTATCACTTTGTTCTCTAATTGCACTGATATACGCTCATAAAATGAGCCCTAATCCAG
Seq C2 exon
ATAGAGAAGCTATTCTCGAGTCAGATGCCAGAGTGAAAGAGCAGCGTAAAGGAGCTGGACCAAAAGTTTTGTACCAAGCAGGCTTGTTTTTGTGGCACGTTGGTCGGCATGATAAAGCGAGAGAATATATTGACCGAATGATCAAGATATCAAATGGGAGTAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016512-'2-3,'2-1,3-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.107
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTACTTGTTGCCAGTGAGGG
R:
CCCATTTGATATCTTGATCATTCGGT
Band lengths:
245-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development