MmuEX6101720 @ mm10
Exon Skipping
Gene
ENSMUSG00000034848 | Ttc21b
Description
tetratricopeptide repeat domain 21B [Source:MGI Symbol;Acc:MGI:1920918]
Coordinates
chr2:66249395-66252232:-
Coord C1 exon
chr2:66252103-66252232
Coord A exon
chr2:66251894-66252004
Coord C2 exon
chr2:66249395-66249561
Length
111 bp
Sequences
Splice sites
3' ss Seq
ACCCCAATCTTGATTTCCAGGTA
3' ss Score
9.41
5' ss Seq
CAGGTACAG
5' ss Score
8.68
Exon sequences
Seq C1 exon
ACGCTGATTAACTACTATTGTCAAGAGCGCTATTATCACCACGTGCTCCTTGTTGCCAGTGAAGGGATGAAGAAGTATAGCAGCGACCCAGTCTTCCGATTTTACCACGCCTACGGCACACTGATGGAGG
Seq A exon
GTAAAGCGCAAGAAGCCCTTCGGGAGTTTGAGGCCATTAAAAACAAACAAGACGTGTCACTGTGTTCTCTGATGGCGCTGATGTATGTCCATAAAATGAGCCCCAATCCAG
Seq C2 exon
ACAGAGAAGCTATCCTGGAATTAGATACCAAAATGAAGGAGCAACGCAAGGAGGCTGGACGCAAAGCCCTGTACCATGCGGGCCTGTTTTTATGGCACATTGGTCGTCATGACAAGGCGAGAGAATATATTGACAGAATGTCAAAAATGCCACATGATAGCAATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034848-'5-4,'5-3,6-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.196
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTCCTTGTTGCCAGTGAAG
R:
TGCTATCATGTGGCATTTTTGACA
Band lengths:
249-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types