HsaEX0067838 @ hg19
Exon Skipping
Gene
ENSG00000123607 | TTC21B
Description
tetratricopeptide repeat domain 21B [Source:HGNC Symbol;Acc:25660]
Coordinates
chr2:166802034-166806234:-
Coord C1 exon
chr2:166806105-166806234
Coord A exon
chr2:166805904-166806014
Coord C2 exon
chr2:166802034-166802200
Length
111 bp
Sequences
Splice sites
3' ss Seq
ATCATAATCTTGATTTTCAGGTA
3' ss Score
9.14
5' ss Seq
CAGGTATGA
5' ss Score
9.46
Exon sequences
Seq C1 exon
ACTTTGATTAATTACTATTGTCAAGAGAGATATTTCCATCATGTATTACTGGTTGCCAGTGAAGGAATTAAGAGGTATGGAAGTGATCCAGTCTTCAGGTTTTATCATGCCTATGGCACATTAATGGAAG
Seq A exon
GTAAAACTCAAGAAGCTCTTCGAGAATTTGAGGCTATTAAAAATAAACAAGATGTATCACTTTGTTCTCTACTTGCACTGATATATGCCCATAAAATGAGTCCTAATCCAG
Seq C2 exon
ATAGAGAAGCTATTCTGGAATCAGATGCCAGAGTGAAGGAACAACGTAAAGGAGCTGGAGAGAAAGCCTTATACCATGCAGGCTTATTTTTATGGCACATTGGTCGCCATGATAAAGCAAGGGAATATATTGACAGAATGATCAAAATATCAGATGGTAGTAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000123607_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.125
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF134241=TPR_12=PU(53.0=62.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCATCATGTATTACTGGTTGCCA
R:
ACCATCTGATATTTTGATCATTCTGT
Band lengths:
254-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)