RnoEX6017147 @ rn6
Exon Skipping
Gene
ENSRNOG00000005868 | Ttc21b
Description
tetratricopeptide repeat domain 21B [Source:RGD Symbol;Acc:1565122]
Coordinates
chr3:52352064-52356583:-
Coord C1 exon
chr3:52356454-52356583
Coord A exon
chr3:52356248-52356358
Coord C2 exon
chr3:52352064-52352230
Length
111 bp
Sequences
Splice sites
3' ss Seq
ACCCCAATCTTGATTTCCAGGTA
3' ss Score
9.41
5' ss Seq
CAGGTACAG
5' ss Score
8.68
Exon sequences
Seq C1 exon
ACACTGATCAATTACTATTGTCAAGAGAGATACTATCACCATGTGCTCCTTGTGGCCAGTGAAGGGATGAAGAAGTATAGCAGTGACCCAGTCTTCCGATTTTACCATGCCTACGGCACACTAATGGAGG
Seq A exon
GTAAAGCTCAAGAAGCCCTTCGGGAGTTTGAGGCCATTAAAAATAAACAAGACGTGTCACTGTGTTCCCTGATGGCGCTGATGTATGTCCATAAAATGAGCCCCAATCCAG
Seq C2 exon
ATAGAGAAGCTATCCTGGAATTAGATACCAAAATGAAGGAGCAACGTAAGGAAGCCGGACGCAAAGCCTTGTACCATGCAGGCCTGTTTCTGTGGCACATTGGTCGCCATGATAAGGCGAGAGAATATATTGACAGAATGTCAAAAATGCCACATGATAGCAATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005868-'2-3,'2-1,4-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.196
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF134241=TPR_12=PU(54.3=67.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGTGGCCAGTGAAGGGATG
R:
TGCTATCATGTGGCATTTTTGACA
Band lengths:
244-355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]