BtaEX0038094 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000010477 | TTC21A
Description
tetratricopeptide repeat domain 21A [Source:HGNC Symbol;Acc:HGNC:30761]
Coordinates
chr22:12482216-12484065:+
Coord C1 exon
chr22:12482216-12482345
Coord A exon
chr22:12483122-12483232
Coord C2 exon
chr22:12483899-12484065
Length
111 bp
Sequences
Splice sites
3' ss Seq
CACGTGGGCTCTCTTCACAGAGC
3' ss Score
9.49
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
Exon sequences
Seq C1 exon
GCTGGGATCATTTACTACAGCAAAGAAAAGTACTTCCGCCATGTGCAGCAGGCCGCAGCTGTGGGCCTGGAAAAATTCAACAATGACCCAGTGCTGCAGTTCTTTAAAGCCTATGGAGTCCTCAGGGAAG
Seq A exon
AGCACATCCAGGATGCCATCAGCAGCCTGGAGAGCATCCGGAATCACCCAGATGTGTCCCTGTGCTCCATCATGGCCCTCATTTATGCTCACAAGTGCTGTGAAACCATTG
Seq C2 exon
ACCGAGAAGCAATTCAGGAGCTTGAGAGCAGCCTGAAGGAAGTCCGCAAGACAGCCAGTGGGACTGCCCTGTACTATGCTGGCCTCTTCCTCTGGCTTATGGGCCGCCACGACAAGGCCAAGGAGTACATTGACCGCACGTTGAAGATCTCCAGCAGCTCCAGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010477_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF134241=TPR_12=PU(89.8=94.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGTACTTCCGCCATGTGCAG
R:
AACGTGCGGTCAATGTACTCC
Band lengths:
245-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development