RnoINT0157562 @ rn6
Intron Retention
Gene
ENSRNOG00000034089 | Ttc21a
Description
tetratricopeptide repeat domain 21A [Source:RGD Symbol;Acc:1308806]
Coordinates
chr8:128628599-128630067:+
Coord C1 exon
chr8:128628599-128628721
Coord A exon
chr8:128628722-128629909
Coord C2 exon
chr8:128629910-128630067
Length
1188 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGC
5' ss Score
7.93
3' ss Seq
CTTTTCTCGGGCTCCCCCAGGCA
3' ss Score
8.19
Exon sequences
Seq C1 exon
GGCTACGTGCTCAAAGGCTGGGTGGACCTCACCTCCAATAAACCCCACGTCGTGAAGAAATCCATCAAGTACCTGGAACAAGGAACGCAAGACACCAAAGATGTGCTAGGCCTCATGGGCAAG
Seq A exon
GTGGGCGGCAGGTGGGGGAATGGGGATGGCAGACCCCCTAGGTTTTGCAAAGGCTGTGACTTCTGACCCTCCTTCCCAACTTGGTGACCTCTGACCATTTTCTGCACCTCTGACTTCTTACTCCACCCACGCCCCCGCANNNNNNNNNNNNNNNNNNNNNNNNNGGGATGAGTAGGGCGGGCTAGGGGGAGGTGGGGAGTCCAAGTCTCCCAGGTGGAGATAGCATACCCTAGGTCACGCCAGTACCAGGGCCCGCCCCTTCCTGATTTGGTTTTACTGTCCTTGTTGGGTGTGCATCACATTGTTGAGTGCTAAGGAGTTGACCCCAGGGGACTTTGCATGCACTCGGCACTGAGCTACACCCCGCTCCTGTTTTGAGACGGACCGCTCACACTATCCATAAGGCTGGCCTTGTGGGGGCCTCACTACGTTAGCTAAGGCTAGCCCTGAGCCTCCCGATCCTCTGCCTCACCTCCTTAATGTATGGCTGGTCAAGGAGGGGGGAGTGACCCGGCAGACCCGCCTAGGTTTTGCAAAGGCTGTGACTTGCTGACCGTCCTCCCCAATTGGTGGACCTCTGACCGTTTTCTGCACCTCTGACTGTTTACTCCCCCACGCCCCCGCACCTCCTCTCCCCACTTGTTACTCAGTGGCCTCGAGAAAAGGAAGGTGCACACTTTGCCTCCCGACTTGAATTTCTGATCTCAATGTGGACGAAAATCTTTTTTTTTTTCTTTTTATGACCCTCATTGACTCAATCTCTGAGAGAGGAAAACCGTTCTCTTACTATCTTCTATGTGTCTGTCTGTCCTTAAGAAATCCTTAAGCCACAGGAGAGGGAAAGGAGAGGGGTGGGGACACCACATGCAAGAACTCTACCAACTGAGCCACATCCCTGGCCCTGGCCCTCATGCCTTTTTGGAAGTCCTGCTGTGACCCTGAAGACTTCTGGTAGAACACCCCAGGGGAACAGTAACCGTCACTGGGCTGCTGAGGCCATGATCCCCAGTCACACACAACAAACAGCTTCCGAGCCCAGCCGGCAGATAGGCCCCCACAGTTAAACTCTGGGCCTTAGGGCTACAGGCCCAGCCGAAAAGAATCTGCACTGCCCATTGGGACCCCCAACCCCTAACAAGTGAGCAGGACCCAGCATCACATGGAAGGTCTTTTCTCGGGCTCCCCCAG
Seq C2 exon
GCAAAGTACTTCATGACACAACAGAACTTCTCCGGGGCCCTGGAGGTGGTGAACCAGGTCACCTTGGCCTACAGCAACTTCCTGCCGGCCTTAGTCCTGAAGATGAAACTGTTCCTGGCTCGGCAGGATTGGGAGCAGACAATAGAAACCGGACAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000034089:ENSRNOT00000043831:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.019
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACGTGCTCAAAGGCTGGG
R:
TCTGTCCGGTTTCTATTGTCTGC
Band lengths:
278-1466
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]