BtaINT0154312 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016512 | TTC21B
Description
Bos taurus tetratricopeptide repeat domain 21B (TTC21B), mRNA. [Source:RefSeq mRNA;Acc:NM_001102108]
Coordinates
chr2:30477979-30478945:+
Coord C1 exon
chr2:30477979-30478089
Coord A exon
chr2:30478090-30478806
Coord C2 exon
chr2:30478807-30478945
Length
717 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
3' ss Seq
CTGAAATGGATTCTGTTTAGGCA
3' ss Score
4.39
Exon sequences
Seq C1 exon
CCTGAGGAAGCCATAGTAGCCTATGAGCAAGCACTAAATCACAACCCAAAGGATGGAACATTGGCAAGCAAAATTGGGAAAGCTCTTGTGAAAACTCATAACTACTCAAAG
Seq A exon
GTAAATACTTCACATTTTTAGATATATCTGTTGGATCAAATTTGCAAACCCTGCTCGTTGAGAAATCTTCAGCAAGCACTATTTGTATCTTAATGATTGGAAACCCCAAATTTGTTTTTACAACTGGAATTTGTGTTAAGGACTTTCTCAGTGTCTCAGATTCTTCTCTGCTTCATTTTGCAAAGGATGTTGGGACCCTAAAGTTTACATCAGGCTTCACCTTACACCCAATTTTGCCATCAAGTAAATTAAGATATGTTTACTGTTAACATCTCTTTCATTATGTGACAAAGCATAATAGATATCCTTTCTGTTGAACCAGTTTTGAGCCATGTGCTTTGAGGATTTTTTTTTTTTTCTGTTTTTTGTTTTCTAGTCAGGATAATGGATTTTCCTCTAGTTATATTCTTGCCCTACTCCTTGTAACTGTTGAACATATATATAACACCTAGCAAAGAATTTTCAGTCAGTAAATTTCACTAACTTTTGGAATAAAAATTTTGAGTACTTTTGTTATTTGCTAGAAGAAATTCTAGTTGCCTTCTGTGAAGTTTGATCCTGTAAGAAAAATGGCATACTTAACCAATAGTGCAAGTCCGTGTATAAGCTGCTTTTAGGTTACTTCCAATTGCTTTAAGTCATAGTGTGTGTAGGGTCTGTGCTTGAATGCCACTCTCACTGCCTTTTCTCTTCCTAACTGAAATGGATTCTGTTTAG
Seq C2 exon
GCAATCACTTACTATGAGGCTGCTCTGAAAAGTGGACAACAAAATTATCTCTGCTATGACCTGGCTGAGCTCTTATTAAAATTGAAGTGGTATGATAAAGCAGAAAAAGTTCTTCAGCATGCTCTAGCTCATGAACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016512:ENSBTAT00000005682:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.054 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134141=TPR_11=FE(54.5=100)
A:
NA
C2:
PF134141=TPR_11=PD(16.7=23.4),PF134321=TPR_16=PU(39.4=59.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGAGGAAGCCATAGTAGCCT
R:
GGTTCATGAGCTAGAGCATGCT
Band lengths:
248-965
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]