DreINT0169082 @ danRer10
Intron Retention
Gene
ENSDARG00000012368 | ttc21b
Description
tetratricopeptide repeat domain 21B [Source:ZFIN;Acc:ZDB-GENE-031010-34]
Coordinates
chr9:50132176-50132559:-
Coord C1 exon
chr9:50132449-50132559
Coord A exon
chr9:50132315-50132448
Coord C2 exon
chr9:50132176-50132314
Length
134 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGT
5' ss Score
11
3' ss Seq
TCTCCATGTTTTTTTCTCAGGCT
3' ss Score
9.71
Exon sequences
Seq C1 exon
CCGGAGTTGGCCATTGAAGTGTATGAACAAGCCCTGAAGAAAAACCCTAAAGATGGAGCTCTGGCCAGCAAGATTGGAAAAGCACTGGTCAAAACCCACAACTATGTAAAG
Seq A exon
GTAAGTGCAGAAGAATCTTTGCATAAATACACCAAAACAAAGTTTGAGTTTGTTCCATATCTGATTAGTTTGGAAAAGAATTTCTGTTTTGATATGCACACATTTATGACTATTTCTCCATGTTTTTTTCTCAG
Seq C2 exon
GCTATCAATTATTATGAGGCAGCGTTGAAGAGCGGACAGCAGAATTTCTTGCGTTATGATCTGGCTGATCTGCTCATGAAGCTCAGACAGTACGAACGCTGTGAAAAAGTCCTGCAAGAGGCTCTCGCACATGATCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000012368:ENSDART00000044270:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134141=TPR_11=FE(52.9=100)
A:
NA
C2:
PF134141=TPR_11=PD(17.6=25.5),PF134241=TPR_12=PU(44.2=72.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGAGTTGGCCATTGAAGTGT
R:
TGCAGGACTTTTTCACAGCGT
Band lengths:
226-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]