GgaINT0048248 @ galGal4
Intron Retention
Gene
ENSGALG00000010956 | TTC21B
Description
tetratricopeptide repeat domain 21B [Source:HGNC Symbol;Acc:HGNC:25660]
Coordinates
chr7:19170903-19171943:+
Coord C1 exon
chr7:19170903-19171013
Coord A exon
chr7:19171014-19171804
Coord C2 exon
chr7:19171805-19171943
Length
791 bp
Sequences
Splice sites
5' ss Seq
AAGGTATTC
5' ss Score
6.8
3' ss Seq
GATTTTTGTGTTTCTTTTAGGCA
3' ss Score
10.19
Exon sequences
Seq C1 exon
CCTGATGAAGCCATAGAAGTCTACGAGCAGGCTTTGAAGAAAAATCCAAAAGATCCAGCTTTGGCAAGTAAAATTGGAAAAGCCTTAATCAAAACACATAACTATTCAAAG
Seq A exon
GTATTCCATAAATACTTGTTCAGTTTTGTATGTTGAGTAGAAGTGTTTAATTTTATAGCAAGTAGAGAGACTTAATATTCCTGAAAGTGAATTTACTGCGTAATGTGCAACTGGCTGAAGTCATAGTTGCATATTGGTGGATATAAACCTGACAAATTGTAGTTCTGGTGACTTAGAGTTGATATGTGTTTGGACCTGCACTCAAAATCATGGTTAAGTACTTATCCATTAACACAGCTTTGATACCTCTCATGTCCTTAGCATTGTATAGCAGAATGGTAACAAAGGCTTCAGCTTCTTAATGTTGGAGAAAAAGAAGAAAATATTTGGGGAAAACTTGGGAGGTCTTACATATTTTTAAACTTCCCAGGATGTTTTGTGATCGTGTTTTTCAGATAGACTTTAGGGAAAATGTTTCTCCTTTTGTATAGTAAAACAGAAATGTATAATTCTGATCCAACTGTAATTACACAGCTTTAGCAGCTAATGAAAGTGTAGTTTAATAAACAGTGAACCAGCTAAAGATAATAGGTGCTAACATGGTTAATCTGCATAATTACCAAAATGTGGCACCGGTTATTCTGTTTCTTTAATTTGGCTCTGAATCCTGGGAAGTCCAAAACTGCAATTAAATAACATCCTATTAATACAGTAATTACTAGAAAATGACTTGGTTACAGAAGGATTGAAGAAAGTAGAGAAAGCTCTAAGCAGGATGTCATAAAAATTGAAGTAGTAAAATTGTTTTCTGTAAGTTTTCTTTAATAACCAGATTTTTGTGTTTCTTTTAG
Seq C2 exon
GCAATCAGTTACTATGAGGCTGCCTTGAAAAGTGGTCAGCAGAATTTTCTTTACTATGACTTGGCTGAACTTTTAATGAAACTAAAGCAGTATGAAAAGGCAGAAGTAGTACTTCAGCAAGCTTTAGATCATGAGTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010956:ENSGALT00000038446:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.054 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134141=TPR_11=FE(54.5=100)
A:
NA
C2:
PF134141=TPR_11=PD(15.2=21.3),PF134241=TPR_12=PU(44.9=74.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGATGAAGCCATAGAAGTCTACG
R:
ACTCATGATCTAAAGCTTGCTGA
Band lengths:
247-1038
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]