BtaINT0154324 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016512 | TTC21B
Description
Bos taurus tetratricopeptide repeat domain 21B (TTC21B), mRNA. [Source:RefSeq mRNA;Acc:NM_001102108]
Coordinates
chr2:30529187-30531188:+
Coord C1 exon
chr2:30529187-30529254
Coord A exon
chr2:30529255-30530650
Coord C2 exon
chr2:30530651-30531188
Length
1396 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACA
5' ss Score
8.88
3' ss Seq
TATTTTGTTTGTTTTGGCAGGTT
3' ss Score
8.53
Exon sequences
Seq C1 exon
GATACAAACTGGCATTTAATTACTTAAAAGCAAAAAGATATGTGGATGCAATTGACATATGTCACCAG
Seq A exon
GTAACACTTAAATTTATATTTCTTAAAATTTTTCAGATGTGCTATTTCCTACTTTTGTTTAATATCAAGTTGTACATGAATAGAGATAGAGGATGTACTGTTTTGGTTCAATGCCTCGTCGGATACATCTGGAAGAAATTACCGGTTTTCAAAGTTTAGAAAATAAAGTTTACTTAAATCAAAAACGTGTTTTTAATTAGGCCTCAAATAAGGTTTGCCAATTTAAAGGAGGAGGCTAGACAAGAAGCATGTTAAACAAACTTAATCCTTAAGTCAGAAAATATCTGAAGATTTTTATAGATTCTCCAGGTCATTGTTTTGAATAGAAGTTCTTATGTTTGTGTCCAAGTCTGGTTATTAGAGGATTCAGATTTATACATTAAAGAGGTATTTTTGTCACTTAGAAGCCATTCAGTTACACTTCTGTAATTGGTTTCTCGACTTCCCTGATGGCTCAGACAGTAAAGACTATGCCTGCAATGCAGGAGAACAGAGTTCGATCCCTGAGTTGGGAAGACCGCTGGAGAAGGGAATGATTACCGACTCCAATTTTATTGCTTGGACAACTCTATGGACAGAGGAACCTAGCAGGCTATAGTCTATGGGGTTGCAAAGCAGCAAACATGATTGAGCGACTGGTTTCGGACTAAATGATCCCTTGCTAAATGACACACTTTTGAGTTGCAGTTTTAGAATTTGCAATTTCTTTATAAATACATTGTCCCATTGATATTCATACAAGGCATTGTACTAAATATCGTTGGGAGCTCCAAGAAAAGCACCTTAGCAGAGAATTATGTAGTGTACCTTATCCCAGATAACTGTGTCAGCATCATTATAGTGAATACTTGGCTCCAGTGATTGCTGTTGATTACTGAGTCTCTATGTAAGGCAACATTTCACATTAAGGTTAAGGTTATATATTAATTTGTGGAGTTTTGATTTTTCTTTCTTTATGACTACCACCCTACTCTTCAACTCAGTAGACCTGGAAATTTGTATGTTTCAAAATCATTCCAGTACACAAATGTGTACTCCTGGGTAAAAATATCTCTAAGGATTTGTTAAATATCATGCATAAATAGCTAAATTTTAAAAAGTATCTTAAATCATTGATCATAATTGTTTTATATAACTGATCTAATAAGGAAATAATTATATTTGTTTTATTTTCCACATGTAGTGGTACATTTTTACCATTTTCATCTAATTACTGTTAATAGAAATGTCACCATGTCATATCTCAGATATCACCTTTAAAAAGTGTTGTTGTATTTGCAATATTATTATAATGTAATCTCAACTGTAATGCCATTGCTAGTAAGTTTTGTGGCTCCCCAGTTCTTGATAATGAATTATAAGTTAAGTTTTTGTTTTATTTTGTTTGTTTTGGCAG
Seq C2 exon
GTTCTTGAAGCACATCCAACTTACCCCAAAATCAGAAAGGATATACTTGATAAAGCTCGCACATCTTTAAGACCTTGAAAATTATTTTAACTTTTCAAAGCAAGAAATGGAAAGAATCTGAGTTCTTCCAGTACAAAATAGGTTAAGCTAATACTTTGTATTAGAAAGCATACTTTCTCCAGCAGAGGCTGCTGTTGCATATAAAGAGAAACACTGTGTTAAATGGATGTCTTCTGATGGAGAAAGTGAATGAGCTGGTTTATTTAATTGACTCTCTTGATTAGGTGCAGATTTGGTGTTTCTGTGATAAAGATTATAACCCATTTCTATAAAGAATATTTTGTTAAAATCTAGATAGGTAAGTACCCTGTATCTTTTATAAGGGATATTGTTTCAGGAAATATGTTTAAAATACTATTGGTCTCTGTTAAACATTTTTGTGAAATTCTGTTATTTCAAAGGTTTGAGTAAGTTTCCATGTAAATATTTATAAAAAAGAAAACATTTTTAATAAACATTTTATGAAATTTATGAACTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016512:ENSBTAT00000005682:28
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAAAAAGATATGTGGATGCAA
R:
ACAGAAACACCAAATCTGCACCT
Band lengths:
345-1741
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]