HsaINT0174192 @ hg19
Intron Retention
Gene
ENSG00000123607 | TTC21B
Description
tetratricopeptide repeat domain 21B [Source:HGNC Symbol;Acc:25660]
Coordinates
chr2:166730453-166732742:-
Coord C1 exon
chr2:166732675-166732742
Coord A exon
chr2:166731343-166732674
Coord C2 exon
chr2:166730453-166731342
Length
1332 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAC
5' ss Score
7.82
3' ss Seq
GTTCTTTATTTGTTTTGCAGGTT
3' ss Score
10.24
Exon sequences
Seq C1 exon
GATACAAACTGGCATTTAATTACTTAAAAGCAAAAAGATATGTGGATTCAATTGACATATGTCACCAG
Seq A exon
GTAAACACTTAAATTTAGATTTCTTAAAATTTTTCAGATGCACAATTTCCTACTTTTTTAAATCTCCAGATGTATGTGAATAGAAATAGAGGATACATTATTTTAGTTAAATGATTTATCAGTATGTTTAGGGAGATTATCAGTGTTCGAAATTTAGAAAATGATGTTCACCTAAATAAAAAACATGTTTTTACTTTGAGATCAAATAATAAAATGTTTATGTCAATTTAAAGACAAAGACCACTGAAGAGTACATATTAAACAATAAACCATAAAATATTTACATGTATGGAAAGGAGTAGGATTAAAGAGGTGGAGTAAAAGAGACTTTTACTTTAAAAAAAAAAAAAGACAAAGACCAGTGGGAGAAACATGTTAAATAAAATGTAGTCTTTAAGTTAGAAGATATTTGAAGACAGTATAGATTCTCCAGATCATTATTCTGATTAGAAGTTCTTGTGAATGTGTCTGAATCTGGTTATTAGAGAATTCAGACTGATCAATTAGAGATAAAAAGGAATTCTATTAGAAGTCATTCAATTGCATTCTGTAATTCATCCCCTAGTAAATGATCACCTACTAAAATGACAAATATTTAAATTACAGTTTTAGAATTTGTAGAGTCTCTTTATATATACATTGTCCCATTGATATTCCATATAAGACATTCTATTAAACATTGTAAGGACCTCCAAGAAAAGTTCATTAGAAAAGAATTTTGTAATGCCCCTTATCCCACACAGCAATCTGTTAGCATCATTACAGTAAATACTTGGCCTTAGTAATTGCTGTTGATTACTGAGTCTCTGTAAAGCAGTATTTCAGTCAGGTTAGGGTTGTGTGTTAATGTAAGGCTATATATTAGGATCATTTTTGGAGTTAAAAAAAAAAACTAGCATCTCCCCACTCTTAGACTCAGTAGAACTAGAAATACGTATGTCTCAAGATCATTTCAGGTAAAGCTAATGTGTGCTGCTGTATAAAAGTCACTCTCTAAGGGTTTATCAGATATTATGAATGAAAAGCTAAATTACAAAAATATTTTAAATCATTGATACATAATTGTTTTATACAATTCATCTATTAGGTAAGCAGTTGTTTGTTATATTTTCTGCATTTGATATTTACATTCTATTGTTCTCATCTAACTACCATTAATATAAAGGAGTCATCATGTTACATTTAAAATGCCACCATTAAAAAGTGTTATAGCTGTTGTAGTATTAGTACAAGGAAATCTTAACTGTAATGCTCATTTCTTATAAGTTTTGTAACTCCGTAGTTTTTGATTATTAGTTACAAGTTTTTATGGGTTCTTTATTTGTTTTGCAG
Seq C2 exon
GTTCTTGAAGCACATCCAACTTATCCAAAAATCAGAAAGGATATACTTGATAAGGCCCGTGCGTCTTTAAGACCTTGAAAATAATTTTAACTTAGGTGTTGGTTTAACAGGAAATGAAAGAAATCTAACTTTCAGTTCTTCCTGTTCAAAACAGGTTTGAGCTCAGTGCTTTGTTATTAGAAGTATACCCTTTTTTCTCCAGCAGAGGTTGCTGCTGTACATCAAGAGAAGTACTATGTGAAATTGGTGTTTCCTAATGGAGTTGAATGAGAGCTGGTCTATTTGACTCTGTTTTGATTGGGTACAGATTTGGTGACTCTGTGGTAAAGACTATAATTATTTCTATAAAGAATATTTTGTTAAAATCTAGGTAATTAAATACCCTGTATCTTTTCTAAGGAATATTATTTCAGGAAATATATTTAAAATGCATTGTTCTCTTTTAAAGTGTTTTTGTTATATTCTTTTATTTATTTATTTATTTTTAAAGACAGAGCCTTGATCTGCCGCCCAGGCTGGAGTGCAGTGGCACGATCTTGGCTCACTGCAACCTCCGCCTCCTGGGTTTACGCGATTCTCCTGCTTCAGCCTCCCGAGTAGCTGGGACTAAAGGCATGTGCCATCACACCCGGCTAATTTTTTGTATTTTTAGTAGAGATGGGATTTCACCGTGTTAGCCAGGAGGGGCTTGATCTCTTGACCTTGTGATCCACCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACCGCACCCAGCCTGTTTTTGTTGTATTCTGTGTTGTTTCAAAAATTGGAATAAATCTCCCTGTAAATAACTCATGAAAAAGACAATATATATATTTTAAATATATATTTTAATAAAGGTTTTATAAATAGATGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000123607-TTC21B:NM_024753:28
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF145591=TPR_19=FE(34.4=100)
A:
NA
C2:
PF145591=TPR_19=PD(18.8=46.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAAAAGATATGTGGATTCAATTGA
R:
GAGTCACCAAATCTGTACCCA
Band lengths:
358-1690
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)