RnoINT0157596 @ rn6
Intron Retention
Gene
ENSRNOG00000005868 | Ttc21b
Description
tetratricopeptide repeat domain 21B [Source:RGD Symbol;Acc:1565122]
Coordinates
chr3:52286794-52288176:-
Coord C1 exon
chr3:52288109-52288176
Coord A exon
chr3:52286872-52288108
Coord C2 exon
chr3:52286794-52286871
Length
1237 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
3' ss Seq
GTTTGGTTTTGTTTCCCCAGGTT
3' ss Score
9.75
Exon sequences
Seq C1 exon
GATATAAATTGGCATTTAATTACTTAAAAGCAAAACGATATGTGGATGCAATTGACGTATGTCACCAG
Seq A exon
GTAAATGTTTAAATTACAATTTCTTAAAATAGTACAGGTGGAGGCTGGGAAGATGGCTCAGCTGTACGGGCTAAGGCTCGTGACCAAAAGTACGGATGCGTAATTTCCTTTCACTTTCAAATGCAACTGAATAGAAAGAAATAGAAGATGTGGTTGTTTAGCTAACTAATGTATTAAATAAATTATGGAGAAATTATCAATGTTCAATTAAAGTATTTGTGTCAATTTAAAGATATAGGCTAGTAGGAAAAAGCTTGTTAAACAAAACCCGGTTTGGAAGGTGTTTGAAGAGATGCTCGGCAGGTAGGAGCCTCTGCTGCTCTTGCAGAGGTCCCCGGTTTAGTCACCACCACCGTGTACAGCTCTCAACCATCTGTAACTGCAGTTTTGGGGCCTCTCCTAGCCTTCTCTGGCCTCTGCAGGCACCAAGTATACATTTAAAGATAATATTGATTTCCCAGGTCATTGCATTAAATGGAATTTTTTGTGATTATATTTAAATCTATTTATTGAAGAATTTTTTATTTGTAAATTATAGCTAAAAATACTCCATAATTTAGAAAATATTTCTGCATTTCATTCCACTAAAACCATACAATTAAATATCTTTAAATCCTTGTAGCTTTAGAATTTTCACAGCTTCTTGAGTCTGCCACATCCCAGTGGTACTTCATGCAAGGAGGACCTAACAGTTTCCCACAGCTCTTACACCTCATATGCTTACATCCCACTATTGCGGTAAATGCCTGGCTAGGTCACTGCTGTTGATCGCTCACTCTGTAAGGCAGTGTTCCTCACTAAGGGAAGGATGAACGCTAAAGCAAGGCCATGCATTCCACTCATTGTGGGCTTCACTCTCACACTAGTACTGTTGGGAATGAGCATGCTCCAGAGTCAGTCCAGGTAAATCTGATGCGTCTCTCGGTTACTGTCACTCTCCCAGAGGGCATTAGACATCACAAGAAGCTGAGTTACAGAAGGATTATACCTTGTCCTCTAAGTCATCTGTTAAGGAAACTTGTATGAGATGTTTCCATATGTGGTTCCACATTCCACGTCTCTTATCTGTTAATGTCAACGAGTCACCAGTCATTGTGATGATTATCACCTTTAAAAAGTGTGATAGTTACAGTGTAAATACAATGGACTGTCGGCCATAATGCCCGGTTAGAGTCTGAGTCATGGCTCCTTTGTTCTCAGCAGTTTGTCTCAAGTTAGTTTGGTTTTGTTTCCCCAG
Seq C2 exon
GTTCTTGAAGCACATCCAACTTACCCCAAAATCCGAAAGGATATACTGGATAAGGCCCGTGCATCGTTAAGACCTTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005868:ENSRNOT00000007832:39
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF145591=TPR_19=FE(34.4=100)
A:
NA
C2:
PF145591=TPR_19=PD(18.8=46.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]