GgaINT0048259 @ galGal3
Intron Retention
Gene
ENSGALG00000010956 | TTC21B
Description
NA
Coordinates
chr7:21161527-21163008:+
Coord C1 exon
chr7:21161527-21161594
Coord A exon
chr7:21161595-21162492
Coord C2 exon
chr7:21162493-21163008
Length
898 bp
Sequences
Splice sites
5' ss Seq
AAGGTACAA
5' ss Score
6.82
3' ss Seq
TTTGTTTTGTCTTTTGACAGGTC
3' ss Score
11.31
Exon sequences
Seq C1 exon
GTTACAAGCTGGCTTTCAATTACCTGAAAGGAAAGAGATATGTTGATGCAATTGCTATTTGTCATAAG
Seq A exon
GTACAATTTGTACTTAATACTCTCTCTACTGTAACAACTCTTGTTTTACATAATGATCCTTCTTTCGTTATATCAGTTATCTTTCTGATATTAATAAGTTTGACTGTCTATGAGATACTTAATTTGCTTTACCCTGAGCTTTCTGGCCAACTGGTAACTAAGAGGTGAAGTGGTTGGCTGGCATATGTGGAAGCATATTCAAGTGGCAGTGCTGCCTTCTCTTTCTGTGGTTGCTGCTTTGCAAAACTATGCAGAGCTGTAGCTGAAGACAATAATAAAATGCTTGTATTGGAAGAATTGTTAGAAAATACTTCATGAACTGCCTGTGTGGTACAAACATATCTAGAATAGATGTAGAATTATAGAGCTACAATTCTAGAGCCAGAGTGAACATAACGATATAATAATTATAAATTTTAATTAAATTTGCTGATTTGAAGAGAAATTTAGGAGTACTGGAAAGGTTAAATTGAATGGAAGAGGAGGGAATTGCAGGGCAAGAAGATAGGGATAGTAAGGAAGACCCTGAAGTACTGAAGACATAAGAGCAGTTTATTGTTGCAGAGAAAGTACACTTGAAACCTTGGGAATGTCTTTAGAAGCTGCTGTTCTGAATGTGCACATCTCAAACCACCTAGAGGCTTTAGCCCTCGACCCTTGCATTTTTGCCAGTAAGGTTACAGTGTGGTAGGAAAGGGAAGCAATGTCTGAAGTTGATCTTGACCAACTCTGTAGTCTCTAATTACAGATATTTCTGCATTCTTGCAAGGAACTTAGCGTGGTATTCAAAGTTCTAGAATGTGTAAGCTCAGCAATGAGGCAGTAACCACCTGAGTGTTCTTTCAGACGCAGAACTCTCTACTGTGGAGGTTCGTTTTTTTGTTTTGTCTTTTGACAG
Seq C2 exon
GTCCTTGAAGCACATCCAAACTATCCAAAGATCAGAAAGGAAATACTTGACAAGGCCCGTGCATCATTAAGAGCATAACTTCTTTTTTTTTTTTGAAGCTAATTGACTTATTAGTATAAGGTGCCTTCAGAAACTGTTGCAGTGACAGAGACCATATCAACACAAATGTATTGTGAACATGATTAATTTGCATTGAATTAGAAGTCTGGATCATTTTCAGGAAAAGTCTGCAGCCCTGGAAGGAACTGTAGCTATTCAGCAGAAAATACTGCTTGCATGTATGGTACATAAAACATCATCCAGAAATAAAAAATAACAAAGACCACAAGCATCTCTATAGAATACTGCCCAAGTGCATTTCAGATAAACACACAACTTGGATTCTAGTGACTTACTGGAGGTACATTTTCAATCTACTTTTCAAAGTTACATGTGTAGTCCACAATGTATATAGCAAGTATTCTATGCAACTGTGTATTTTTCAGAAAAGTAATAAAATAATTCTAAATACAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010956:ENSGALT00000017831:28
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134141=TPR_11=FE(32.8=100)
A:
NA
C2:
PF134141=TPR_11=PD(7.5=19.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAGCTGGCTTTCAATTACCTGA
R:
TGTACCATACATGCAAGCAGT
Band lengths:
353-1251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]