BtaINT0154330 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016512 | TTC21B
Description
Bos taurus tetratricopeptide repeat domain 21B (TTC21B), mRNA. [Source:RefSeq mRNA;Acc:NM_001102108]
Coordinates
chr2:30456771-30458448:+
Coord C1 exon
chr2:30456771-30456869
Coord A exon
chr2:30456870-30458255
Coord C2 exon
chr2:30458256-30458448
Length
1386 bp
Sequences
Splice sites
5' ss Seq
ACTGTAAGA
5' ss Score
4.8
3' ss Seq
TAATTTTTTTTTCTTTTTAGTGT
3' ss Score
9.71
Exon sequences
Seq C1 exon
GCTGCCACCCAGCTGGAAAACTTAGGAAATGCGTTGGATGCCGTGGAACCACAGAATGCTCAACTGTTTTATACGATCACAATAGCCTTCAGCAGAACT
Seq A exon
GTAAGAGTACAGCAAAGCTCTGTTATTTGTAGCTGGAAATATAAAATTAGTCACAAATGTTGAAGCACCAAAAAGCATATGGCCTAGAGTGAAAATACTTGAAAATTCATAGATGTGCCTATGAATATGTGATACATTCTTAAGGGAGGTAGTTCAGAGGAGATACAGTTTCCAGCTATAAAAGACCATCATGGAGGGTTCATGGAGGAAGTGGCACTTGTGAATCCTATAAGAATAGGGAAGTGCCTTCCAGACGAAGGAAATGGAAAGTGATTTATTTTAACCAGAGCATAGGATTTATGACTAAGGTTGTTCTTTCCTTTATGTTTTTAAAACTGTTTTTTAAATATTTTAAAATAAGTAATGGAATATTAGGGTTGAGGAAATGGTTTCTGTCTTACTTTTTGTAATAGTAAAGAAATTATTTTTATGACAAGCACCCATAAAGAGGTAATTGGAAATGGAATAGATAAATATAGCAGAATCTTAAAACCAATACAAGAAACGAGAGGATTGAAACTATGCTAGAAAAAAATAAGGAAAAGGGCAGACTGAGTAAAATAATTATTAAAATAAAGTTGAAAGAAAATAATTAAGTTTATTATTGTTAAATGACATGAATAAACTGAATTCTCTTAATTAAAAACAAAGGTTGTCTTATCATGTGAAATTTAGGGGAACTGCTCCCCATTACAGAAATTTGAGTTAGTGGGGAGTATTAACATTTTTTTATTTACCTACCGCAGACGTATGATTGTTACTAGTTTACAGCAAATCAAACAATTTAGTAAGTAACAACTCTTCAAAGTAATGATGTTCAAAAAGTATATACTTAATTCTGACAACATTGCCATTTCCTGAAATATTTTTGAAGGCGTTTTTTCAAGAAGATTATAAGGCGTGGTTCTCACTAGTGGCACACTTGTCTTTAGGGGTAAATCAGATTCTTATCCTAGTTTTCAATGCAATAAAAGTTCAATAAAATATATACGTCTCTCTATATTATGCTATATCTACACACACACATATGTAAATATATATAAAACCTTAAATAATGATTTTCTTCTCTAATTATAAGACAGTCATGAGACAGTTTAAAAAGCAAGTTATAAAAAATATGCTTGTGGAGTAGCATAGAAGCAATACATTTTTCAAGAGAGCTGTTTTTTAAAAGCACTACTCATTAGGATGTTTAAGTTCTGATAGGATATAAACTGTTGATGCACTATCTAGATAGTAAATACAGTAGATTTATTATTCTTCTAATTTTTTTCCTATATTTTTCATCTGTGAAATGCAAATTATTCATATGTACATTTAGAAAAAACAAATTCTTCCATCTTCGTAGACTTGTTTTAGTTTAACTTAATTTTTTTTTCTTTTTAG
Seq C2 exon
TGTGGACGTAGTCAACTCATTCTTCAGAAAACCCAAACATTACTAGAAAGAGCTTTTAATTTAAATCCTCAGCTGTCAGAATTTGCTACAGAGCTTGGATACCAAATGATTTTACACGGGAAAGTGAAAGAGGCCTTGAAGTGGTACAAGACCGCCATGACACTAGACGAGACCAGTGTCCCTGCTCTCGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016512:ENSBTAT00000005682:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF145591=TPR_19=PU(39.7=44.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCACCCAGCTGGAAAACTTA
R:
CAACGAGAGCAGGGACACT
Band lengths:
289-1675
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]