HsaINT0174198 @ hg19
Intron Retention
Gene
ENSG00000123607 | TTC21B
Description
tetratricopeptide repeat domain 21B [Source:HGNC Symbol;Acc:25660]
Coordinates
chr2:166786682-166788366:-
Coord C1 exon
chr2:166788268-166788366
Coord A exon
chr2:166786875-166788267
Coord C2 exon
chr2:166786682-166786874
Length
1393 bp
Sequences
Splice sites
5' ss Seq
ACTGTGAGA
5' ss Score
2.78
3' ss Seq
TCATTTTTTTTTCTTTTTAGTGT
3' ss Score
11.07
Exon sequences
Seq C1 exon
GCTTCCACCAAGCTGGAAAACTTGGGAAATACATTGGATGCCATGGAACCACAGAATGCTCAACTTTTCTATAACATTACACTCGCCTTCAGCAGAACT
Seq A exon
GTGAGAGTGCCTACCATGTACCAGAGCTCTGTTATCTATAGTAGAGGACATAAAATAAGTGGAAAAGGTGGAAGCAGGGAAGAGCATATGGCCTAGAGTGCAAATATGTATTTAAATATATGATATACTCCTAGGAAAGGCAGTTTAGAGGAGGTGTGGTTTCCAACTGTAAGAACCTGATGGAGGCTTCATGGAGGAAATGCCACTTACTGATCTTTTAAGCATAGCGAAGTGCCTTCCAGACAAAGGAAATAGAAGGTGGTTTATTTTCATCAGAGCATAAGATTTATGACCAGGATTGCTCTTAGCTTTTGTTTTTTAAAACTATTTTTAAAAAGTTTTAAAGTGTATAAAAGACCATTTTGGTGGAGGGAATGGTTGGTATCTTATTTTTTAAAAAACAACAGGAAAGAAATGTTTTTATTATAAGCTCCCAGTAAAAGAAAGGTAATCAAGAATGAAATAGAAAAATACAGTAGAATCTCAAAATCAATACAAGGAATGAGAATATTGAAAAGTTCATTAAACTAAGAAGGTTAAAATAATTAGCAAGCATAAAGTTGAAAGAAAAAAGGATTATTAATTGTTAAATGACATGAATATACTGAATTTTCTTATTTAAAAACAAAGATATCAGATTGTGTAAACTTTAGAGGAAGAAAACTCCATGCTATAACGAAAGTTTGAATTAAGGAGGTATTTACCTTTTTTGCTTACCGTAGTGCTAGACACATTATTTCAATTAGTTTTTTACTAAGCTTATAAAATATAAGTTCAAACATTTGAATAAATATTTTACTCTTAAAGTTTGTTGTCTTGAAAAATTATGTACTTATTCTAACAACACTGCTATTTCTTGAAATTTTTTTCAAGAAGATTCTAAGGCATGAGCTTTTAAAATATTCTCACTGATGGCATAGCTAGTGTTTAGGGGGAAAACAGATCCTAGTCCTAGTTTTTTATTCAATAAGAAAAAGCATACATATATTATACACACACACACACACACACACACACACACACACCCCCATACCCACGTAACCATAAAATAATGGTTTTCCTGTTTAATCTGTAAAACAGTCATGAGACAGCTTGGAAAAGGAGTTCAAAAAATATGTTTTTGCAGTGACATCATTAGAAGTGTACTTTTCATACTAGTTATTTTGTAAAAGCATTATATTCATTAGGATATTAAGTTCTGATAGAATATAAACTCTTTCTTGATGCATTGTCTAGATAATAGGAAAGTTTTATTTTTCCTTAATTATTAATTTTTTTCTTTTTCATCACTCCTTTGAAGTACAAATAATATATATATTTAGAAAAAATAATCCTTTAGTCTCAGTAGAAATGTTAGACTTTGAAATCTTACATCATTTTTTTTTCTTTTTAG
Seq C2 exon
TGTGGACGTAGTCAACTTATTCTTCAAAAAATTCAAACGTTACTTGAGAGAGCTTTTAGTTTAAACCCTCAGCAATCAGAATTTGCTACAGAACTTGGATACCAAATGATTTTACAAGGAAGAGTTAAAGAGGCACTGAAGTGGTATAAGACCGCCATGACACTTGATGAGACTAGTGTGTCTGCCCTAGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000123607-TTC21B:NM_024753:8
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.030 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF145591=TPR_19=PU(50.9=44.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCCACCAAGCTGGAAAACT
R:
AGGGCAGACACACTAGTCTCA
Band lengths:
286-1679
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)