GgaINT0048239 @ galGal3
Intron Retention
Gene
ENSGALG00000010956 | TTC21B
Description
NA
Coordinates
chr7:21137691-21138605:+
Coord C1 exon
chr7:21137691-21137789
Coord A exon
chr7:21137790-21138412
Coord C2 exon
chr7:21138413-21138605
Length
623 bp
Sequences
Splice sites
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
3' ss Seq
AGATTATTCTTACCTTTTAGTGT
3' ss Score
7.61
Exon sequences
Seq C1 exon
GCTTCGGCAAGACTAAGTGACCTCATTAAAGCATTGGACAGGTTGGAGCCGCGTAATTCACAGCTCTTCTATAAAATGGCTTTAGCTTTCAGTAGAACA
Seq A exon
GTGAGTGGACTTTATTTTTCTTAAGCAACAGACAAATAACCACGTATCGTTTGTTTTATTTAACGTTTGTACCAGAAAATGTGTTCTAACAAGTGCTTTCCCAAAGATTTAATAAGTGAACTTGTATGGCCTTTGGTAACTCAGTTTTTAAAAGTTTTGCGTTCATTTGCATTGTGAATTCAAATATTTGAGCAGTGTCATTCCTAAAATGGTTTTATTACTTACTTTTTAAATGAGAAAGAGGTTCTTAATGAAAATATACTCAAATATCTCATAGAATGTTTAGTAGGACAAAGATTTGTTAGGCTTCGTCATACAGCTTTGAAGTGGAAAGCTTCTTTAATCCTTATCAGAACCCTTTTAAGAAGGCATTCAAACAGCTATCAACTGTGTGGACTTTTCTTTTATATGGTATTCTGTATTTGTTTGAACCCCGGCACACTTTACTGTTTGAATTCTTATGGAATTACTATGGATCAGTCTAATGTGAGGTTATGGCTTTTTTTCAACTGTTGCAGTAATATTAAGTGTGGAAACTCTAAAATCTGAAATACCTTTATCTTTTTCTAACTTAATTTGGAGGGAAAAAGAATTTGAAGATTAAGATTATTCTTACCTTTTAG
Seq C2 exon
TGTGGCCGGAACCAACTCATCCTTCAACATACACAAACATTAGTTGAAAGAGCATTTAATTTGGATTCTGACAATGCAGAATTTGCTACGGAGCTTGGCTACCAAATGATTTTACAAGGGAAAGTGAAAGAAGCTTTAAAATGGTATCAGACTGCTATGACACTTGATGAGACAAGCGTTTCTGCCCTAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010956:ENSGALT00000017831:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF145591=TPR_19=PU(50.0=44.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTCGGCAAGACTAAGTGACC
R:
GGGCAGAAACGCTTGTCTCAT
Band lengths:
286-909
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]