DreINT0169100 @ danRer10
Intron Retention
Gene
ENSDARG00000012368 | ttc21b
Description
tetratricopeptide repeat domain 21B [Source:ZFIN;Acc:ZDB-GENE-031010-34]
Coordinates
chr9:50149958-50150469:-
Coord C1 exon
chr9:50150371-50150469
Coord A exon
chr9:50150151-50150370
Coord C2 exon
chr9:50149958-50150150
Length
220 bp
Sequences
Splice sites
5' ss Seq
GTGGTAATA
5' ss Score
3.78
3' ss Seq
TTTGTGGGGTCTCTCTGCAGTGT
3' ss Score
8.3
Exon sequences
Seq C1 exon
TCTGTAAATCAGCTATCAAATCTGATAAGCAATCTGGACATTCAAGAACCGAGCAATCCGGAGCTCTTCTACAGGATGTCTTTGGCGTTCACTCGAGTG
Seq A exon
GTAATACTCAAACAGATTCAGTCACCATTTAACATTTATGCTAACATGAATCTTGTAAACATATTTGTCACAACCTTTAACACACGAAATGATTCACAATGCATTGACCTTCTGTATTTCGGCTTGCACACAACAGCATTAATAATGCATTTCTTTGAAGCTGCCATAGCACAGAAGTAGTGATGCTGCATTTAGATGTGTTTGTGGGGTCTCTCTGCAG
Seq C2 exon
TGTGGAAGAGCTGAGAAGATTCTCCAGCACACTCACCGGATGGTGGAGCGGGCATTTGCACAGGCTTCCAGTGACTCTGAACTAGCCACAGAGATGGGCTACCAGCTGATCCTCATGGGCAGAGTCAAAGAGGCCATGAAGTGGTACAAAACAGCAATGACTCTTGATGAAAGCAGCGTCTCCGCTTTGATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000012368:ENSDART00000044270:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF145591=TPR_19=PU(38.2=44.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATCAGCTATCAAATCTGATAAGCAA
R:
GGAGACGCTGCTTTCATCAAGA
Band lengths:
276-496
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]