BtaINT0155290 @ bosTau6
Intron Retention
Gene
ENSBTAG00000025274 | TUBB4B
Description
Bos taurus tubulin, beta 2C (TUBB4B), mRNA. [Source:RefSeq mRNA;Acc:NM_001034663]
Coordinates
chr11:105861843-105862139:-
Coord C1 exon
chr11:105862031-105862139
Coord A exon
chr11:105861954-105862030
Coord C2 exon
chr11:105861843-105861953
Length
77 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGA
5' ss Score
8.72
3' ss Seq
GACGCTCTCCCGCCCCCCAGGTG
3' ss Score
11.26
Exon sequences
Seq C1 exon
TTTTGGGAGGTGATCAGCGACGAGCATGGCATCGATCCTACCGGCACCTACCACGGGGATAGCGACCTGCAGCTGGAGCGAATCAACGTGTACTACAACGAGGCCACCG
Seq A exon
GTGAGACCCCGCGCCCCTTCCCCACCCCCATGCCGCCCCCGCGGCCTTCCCCTCGCTGACGCTCTCCCGCCCCCCAG
Seq C2 exon
GTGGCAAGTATGTGCCCCGCGCGGTGCTCGTGGACCTGGAGCCGGGCACCATGGACTCTGTGCGCTCGGGCCCTTTCGGGCAGATCTTCAGGCCGGACAACTTTGTCTTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000025274:ENSBTAT00000008372:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.135 A=NA C2=0.026
Domain overlap (PFAM):
C1:
PF0009120=Tubulin=FE(16.2=100)
A:
NA
C2:
PF0009120=Tubulin=FE(16.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCGATCCTACCGGCACCTA
R:
GTTGTCCGGCCTGAAGATCTG
Band lengths:
181-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development