GgaINT0126165 @ galGal4
Intron Retention
Gene
ENSGALG00000008586 | TUBB4B
Description
tubulin beta-3 chain [Source:RefSeq peptide;Acc:NP_001074329]
Coordinates
chr17:1873444-1873738:-
Coord C1 exon
chr17:1873630-1873738
Coord A exon
chr17:1873555-1873629
Coord C2 exon
chr17:1873444-1873554
Length
75 bp
Sequences
Splice sites
5' ss Seq
CAGGTACGG
5' ss Score
10.88
3' ss Seq
GGCCTCTCCCTGTGTTGCAGGCG
3' ss Score
8.7
Exon sequences
Seq C1 exon
TTCTGGGAGGTGATCAGCGACGAGCACGGCATCGACCCGACGGGCACCTACCACGGAGACAGCGACCTGCAGCTGGAGCGCATCAACGTGTACTACAATGAGGCCACAG
Seq A exon
GTACGGCCCCGCGCGGCCCCCTCGCCCCCCCCCCCCCGCCCCGCCCCGCGCTCACGGCCTCTCCCTGTGTTGCAG
Seq C2 exon
GCGGCAAGTACGTGCCCCGCGCCGTGCTGGTGGACCTGGAGCCCGGCACCATGGACTCGGTGCGCTCGGGGCCCTTCGGCCAAATATTCAGGCCGGACAACTTCGTATTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008586:ENSGALT00000013980:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.135 A=NA C2=0.026
Domain overlap (PFAM):
C1:
PF0009120=Tubulin=FE(16.2=100)
A:
NA
C2:
PF0009120=Tubulin=FE(16.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTACCACGGAGACAGCGA
R:
AATACGAAGTTGTCCGGCCTG
Band lengths:
172-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]