GgaINT0126165 @ galGal3
Intron Retention
Gene
ENSGALG00000008586 | F1NYB1_CHICK
Description
NA
Coordinates
chr17:2278563-2278857:-
Coord C1 exon
chr17:2278749-2278857
Coord A exon
chr17:2278674-2278748
Coord C2 exon
chr17:2278563-2278673
Length
75 bp
Sequences
Splice sites
5' ss Seq
CAGGTACGG
5' ss Score
10.88
3' ss Seq
GGCCTCTCCCTGTGTTGCAGGCG
3' ss Score
8.7
Exon sequences
Seq C1 exon
TTCTGGGAGGTGATCAGCGACGAGCACGGCATCGACCCGACGGGCACCTACCACGGAGACAGCGACCTGCAGCTGGAGCGCATCAACGTGTACTACAATGAGGCCACAG
Seq A exon
GTACGGCCCCGCGCGGCCCCCTCGCCCCCCCCCCCCCGCCCCGCCCCGCGCTCACGGCCTCTCCCTGTGTTGCAG
Seq C2 exon
GCGGCAAGTACGTGCCCCGCGCCGTGCTGGTGGACCTGGAGCCCGGCACCATGGACTCGGTGCGCTCGGGGCCCTTCGGCCAAATATTCAGGCCGGACAACTTCGTATTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008586:ENSGALT00000022476:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.135 A=NA C2=0.026
Domain overlap (PFAM):
C1:
PF0009120=Tubulin=FE(16.2=100)
A:
NA
C2:
PF0009120=Tubulin=FE(16.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTACCACGGAGACAGCGA
R:
AATACGAAGTTGTCCGGCCTG
Band lengths:
172-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]